PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g041050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 342aa    MW: 38741 Da    PI: 9.2182
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g041050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-3251104255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Csa06g041050.1  51 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 104
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75947107IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2947105IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1449105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2251106IPR006447Myb domain, plants
PfamPF002491.2E-952103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MISSMEEGEK TDREEEEDEG EGQESKASSN STVEESDKKT KVRPYVRSKV PRLRWTPDLH  60
LRFVRAVERL GGQERATPKL VRQMMNIKGL SIAHVKSHLQ MYRSKKIDDH GQAISDDKYL  120
FDTSTDRNIY KLSQLPMFRG YNHNNDSPFR YGSKFSNASL WSSSSHETNR SLVDQIRPGL  180
IRSSSVSNNI RGSEYWTNNR SFQNIYSSSV SNHLPKLRHD HQERTNSVSI QGHSSRTLEK  240
FQIGVEERIN MHAYCNKTTG KRNASKSLDL DLDLSLKITQ PEKTVSEETE SAATTTDQTL  300
SLSLCSGSSA LKKSRLIKTD DEEDRTVKSG CRQASTLDLT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1652106458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g041050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517118.10.0PREDICTED: two-component response regulator ARR18-like isoform X1
TrEMBLR0HTS20.0R0HTS2_9BRAS; Uncharacterized protein
STRINGXP_010517118.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-160G2-like family protein