PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g038950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 373aa    MW: 42033.5 Da    PI: 4.2147
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g038950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731025e-3252146397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +++ ws++De+v+L G++d++ +t++s+ +d+ a+y ++k+++++++sk+q+++K++rLK+Kf ++++++++gk++sf+ ++d++if+ls++iW 
  Csa06g038950.1  52 SKMNWSKNDELVILGGIVDYEIETKSSYGSDWAALYLYIKDNVEANFSKKQFIDKVKRLKRKFIDNQERSNDGKDVSFTDTDDDEIFKLSMMIWA 146
                     7899******************************************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-2454145IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVATKRFGDH SNSSSDDSLT RKRDDDVEAM HRTRKQLKTT TTTTTLKPSS ASKMNWSKND  60
ELVILGGIVD YEIETKSSYG SDWAALYLYI KDNVEANFSK KQFIDKVKRL KRKFIDNQER  120
SNDGKDVSFT DTDDDEIFKL SMMIWAKSET EDAVSSEDMD QAKDVPSGEQ ENMPCAEQER  180
VSVEIDNGEK GKLDQAKDVP CAEQEDKDVP CAEQKDKDVP CAEQEDEDVP CAEQEDKDVP  240
CAEQEQVSNE IDDNGEQEMI EEDGADELGV MEDTLESVIS FQSLAKNGEK DKSKEDGVGE  300
VGVLLEILEA DTFYKNCSKY QQKLLRQNLE NVGAERRKEL IDEWKALLVQ EMKLSIKKFN  360
FMAKFANAGV SP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g038950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516846.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like 3
SwissprotQ9SJM41e-158STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLR0FWQ61e-160R0FWQ6_9BRAS; Uncharacterized protein
STRINGXP_010516846.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-159DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]