PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g038950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 373aa MW: 42033.5 Da PI: 4.2147 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 102 | 5e-32 | 52 | 146 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++ ws++De+v+L G++d++ +t++s+ +d+ a+y ++k+++++++sk+q+++K++rLK+Kf ++++++++gk++sf+ ++d++if+ls++iW Csa06g038950.1 52 SKMNWSKNDELVILGGIVDYEIETKSSYGSDWAALYLYIKDNVEANFSKKQFIDKVKRLKRKFIDNQERSNDGKDVSFTDTDDDEIFKLSMMIWA 146 7899******************************************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.3E-24 | 54 | 145 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MVATKRFGDH SNSSSDDSLT RKRDDDVEAM HRTRKQLKTT TTTTTLKPSS ASKMNWSKND 60 ELVILGGIVD YEIETKSSYG SDWAALYLYI KDNVEANFSK KQFIDKVKRL KRKFIDNQER 120 SNDGKDVSFT DTDDDEIFKL SMMIWAKSET EDAVSSEDMD QAKDVPSGEQ ENMPCAEQER 180 VSVEIDNGEK GKLDQAKDVP CAEQEDKDVP CAEQKDKDVP CAEQEDEDVP CAEQEDKDVP 240 CAEQEQVSNE IDDNGEQEMI EEDGADELGV MEDTLESVIS FQSLAKNGEK DKSKEDGVGE 300 VGVLLEILEA DTFYKNCSKY QQKLLRQNLE NVGAERRKEL IDEWKALLVQ EMKLSIKKFN 360 FMAKFANAGV SP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g038950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516846.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein-like 3 | ||||
Swissprot | Q9SJM4 | 1e-158 | STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3 | ||||
TrEMBL | R0FWQ6 | 1e-160 | R0FWQ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010516846.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12440 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36340.1 | 1e-159 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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