PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

AP2

Protein Properties

Length: 304aa MW: 32732.7 Da PI: 5.1001

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g038270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.5	1.4e-17	45	94	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Csa06g038270.1 45 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 94 59**998.******854...6********************99887 PP
2	AP2	24.5	6.9e-08	174	201	28	55
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 + r++lg+f tae+Aa+a++ a+++++g Csa06g038270.1 174 KSRIWLGTFSTAEMAARAHDVAALAIKG 201 589********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	6.47E-21	45	103	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.8E-32	45	103	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.576	45	102	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-39	45	108	IPR001471	AP2/ERF domain
CDD	cd00018	1.09E-33	46	104	No hit	No description
PRINTS	PR00367	3.8E-10	46	57	IPR001471	AP2/ERF domain
Pfam	PF00847	4.4E-11	46	94	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-10	68	84	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.129	132	209	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-11	171	215	IPR001471	AP2/ERF domain
CDD	cd00018	2.25E-18	172	211	No hit	No description
SuperFamily	SSF54171	1.11E-10	173	210	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.3E-17	173	210	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-4	173	201	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MERDDDCRRF QDSPAQKTER RVKNYPKKKR SVKDDEKVVV SKHPTFRGVR MRQWGKWVSE 60 IREPKKKSRI WLGTFSTAEM AARAHDVAAL AIKGGSAHLN FPELAYHLPR PASADPKDIQ 120 AAAAAAAAAV AIDMEVETSS PSPSPTVTET SSPGTTAISD DAFSDLPDLL LDKKSRIWLG 180 TFSTAEMAAR AHDVAALAIK GGSAHLNFPE LAYQLPRPAS ADPKDIQAAA AAAAAAVAID 240 MEVETSSPSP SPTVTETSSP GMTAISDDAF SDLPDLLLDV NHKIDGFWES FPDDEEPFLS 300 QSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-16	39	102	8	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g038270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006068	1e-165	AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBank	AY560845	1e-165	AY560845.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds.
GenBank	BT025754	1e-165	BT025754.1 Arabidopsis thaliana At2g35700 mRNA, complete cds.
GenBank	CP002685	1e-165	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	DQ446600	1e-165	DQ446600.1 Arabidopsis thaliana clone pENTR221-At2g35700 AP2 domain-containing transcription factor (At2g35700) mRNA, complete cds.
GenBank	DQ653042	1e-165	DQ653042.1 Arabidopsis thaliana clone 0000016552_0000011552 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516772.1	1e-113	PREDICTED: ethylene-responsive transcription factor ERF038
Swissprot	Q9ZQP3	2e-91	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	D7LIJ5	2e-94	D7LIJ5_ARALL; Uncharacterized protein
STRING	XP_010516772.1	1e-113	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	4e-66	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]