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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g037920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 265aa MW: 28840.1 Da PI: 9.6663 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.7 | 1.9e-13 | 156 | 181 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G +C+FaHg Csa06g037920.1 156 WKTRICNKWEITGYCPFGTNCHFAHG 181 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-14 | 70 | 107 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 72 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-5 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.798 | 73 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-17 | 150 | 185 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-10 | 152 | 186 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-8 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.216 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 156 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MSHRRASGSD VVHVRTTNDL PPENRFPNSG SDSSIWATED DYNRVWAMPM HPDDAESPSK 60 KTRSSSSEIG KSFFKTKLCF KFRTGTCPYA ASSCHFAHSS EELRRPPPPP NRQKTAATEA 120 LRNRESFAIS LGPRGYGGAA SDGGGNVAQT LKPPNWKTRI CNKWEITGYC PFGTNCHFAH 180 GASELHNFGG GLVEGEGKIG TSTTPATKQT GQANTVTHLV SPGVLSQRTS SSVMQKPNGV 240 RTQRKWKGPD KISRVYGDWI DDIE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g037920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516719.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 28-like | ||||
Swissprot | Q5PP65 | 1e-131 | C3H28_ARATH; Zinc finger CCCH domain-containing protein 28 | ||||
TrEMBL | R0HDV0 | 1e-145 | R0HDV0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010516719.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35430.1 | 1e-114 | C3H family protein |