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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g036530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28360.9 Da PI: 9.3972 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.1e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+ Csa06g036530.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 115.1 | 6.4e-38 | 95 | 188 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++R+kKne+l+++ie++qk+e elq++n++Lr+k++e Csa06g036530.1 95 PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRTKKNEMLVTEIEYMQKREMELQHDNMYLRAKIAE 188 45899**************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.1E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.389 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.04E-44 | 17 | 90 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-32 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.1E-27 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.276 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEEGGSSHEA DNSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA NTQYYQQEAS KLRRQIRDIQ 120 NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRTKKNEM LVTEIEYMQK REMELQHDNM 180 YLRAKIAEGA RLNPDQQESN VIQGTTVYES GVSSHQSHHY NRNYIPVNLL EPNQQFSAQD 240 QPPLQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g036530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU551771 | 0.0 | EU551771.1 Capsella bursa-pastoris SHATTERPROOF1-like protein (SHP1b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516534.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL1 | ||||
Swissprot | P29381 | 1e-176 | AGL1_ARATH; Agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A1I9LM27 | 1e-173 | A0A1I9LM27_ARATH; K-box region and MADS-box transcription factor family protein | ||||
TrEMBL | C1IDX3 | 1e-173 | C1IDX3_CAPBU; SHATTERPROOF1-like protein | ||||
STRING | XP_010516534.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3341 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-166 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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