PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g035410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 479aa    MW: 53655.1 Da    PI: 9.918
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g035410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.91.3e-1326126186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsess..stcp 80 
                     +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++ +++ s  s +p
  Csa06g035410.1  26 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSDSNPGGSyvSPWP 120
                     7************************************************997777789*****************9999888876544322789* PP

        trihelix  81 yfdqle 86 
                     +f+ l+
  Csa06g035410.1 121 FFSALD 126
                     **9997 PP
2trihelix43.96.3e-14192291186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrt.sessstcpy 81 
                     +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++ +    +s +p+
  Csa06g035410.1 192 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSDSNpGSYVSPWPF 286
                     7************************************************997777789********************99998862445789*** PP

        trihelix  82 fdqle 86 
                     f+ l+
  Csa06g035410.1 287 FSALD 291
                     *9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-2424128No hitNo description
PfamPF138373.4E-24190293No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MMDSVHDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELSRGN LRQKHWQEVA  60
NAVNDRHFNS GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSDSN PGGSYVSPWP  120
FFSALDDLLR ESFPTSSTPD STDNNPNLRL SLPMAIIPVP LTVVHRMMDS VHDSFSPGSS  180
RPSPSTLSRE DCWSEEATFT LIQAWGNRFV ELSRGNLRQK HWQEVANAVN DRHFNSGRNV  240
SAAKSQPYRT DVQCKNRIDT LKKKYKVEKA RVSDSNPGSY VSPWPFFSAL DDLLRESFPT  300
SSTPDSTDNH NPNLRLSLPM AIIPVPVAPR SAIPRRPATS PAIIPHVGDD LLGFRGNLNA  360
FAAAAAAAAC PASEDDCSRS RSSGGRSGSN KKREREIERK QGYKEVAEAI ERLGQIYERV  420
EERKRKEMVE LEKQRMRFAK ELECHRMQLF TEMQVRLHKL RRTSGSKGPT SSASAGET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g035410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1370820.0AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516511.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0FPF30.0R0FPF3_9BRAS; Uncharacterized protein
STRINGXP_010516511.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-150sequence-specific DNA binding transcription factors