PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g030380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 400aa    MW: 43870.3 Da    PI: 6.5149
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g030380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-184287147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd  l ++v +lG ++W++Iar ++ gR++k+c++rw + 
   Csa06g030380.1 42 KGPWSTEEDAVLTKLVIKLGARNWSLIARGIP-GRSGKSCRLRWCNQ 87
                     79******************************.***********985 PP
2Myb_DNA-binding49.21.2e-1594138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia+++  gRt++ +k++w++ 
   Csa06g030380.1  94 RKPFSDEEDRMIISAHAIHGNK-WAVIAKMLT-GRTDNAIKNHWNST 138
                      789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.123792IPR017930Myb domain
SuperFamilySSF466891.41E-2939135IPR009057Homeodomain-like
SMARTSM007171.9E-144190IPR001005SANT/Myb domain
PfamPF002494.4E-164287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-254395IPR009057Homeodomain-like
CDDcd001671.49E-134486No hitNo description
SMARTSM007176.6E-1693141IPR001005SANT/Myb domain
PROSITE profilePS5129420.45693143IPR017930Myb domain
PfamPF002493.7E-1494138IPR001005SANT/Myb domain
CDDcd001679.77E-1296139No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2396142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDRSEPLPLP FTDSDDISAE LAGGDSSGGC GGGGGRVKSK VKGPWSTEED AVLTKLVIKL  60
GARNWSLIAR GIPGRSGKSC RLRWCNQLDP SLKRKPFSDE EDRMIISAHA IHGNKWAVIA  120
KMLTGRTDNA IKNHWNSTLR RKYADLWNNG QWMANSVTTA YVKNEKLDEV SKPSSKQQLP  180
QEDINSPPKP PQVSDVIMED AANEPHQEQA SPPVEINVQA PPVESNVQAP PVESNVPIES  240
SNVFRPVARV GAFSVYNPTS QRNGYRDHNI VPCEGLLIQA AKPDSLAGKF LQSLYDEPHV  300
PSKCGRGCST TNAAETKFSR NSVLGPEFVD YEEPCAVFNQ ELISIATDLN NIAWIKSGLD  360
NAVVREAEQS LKIDNCNYND PRIKFTGMVP RQDFFCARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-37411426107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g030380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2627341e-170AF262734.2 Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA, complete cds.
GenBankAY1363251e-170AY136325.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
GenBankAY5196001e-170AY519600.1 Arabidopsis thaliana MYB transcription factor (At3g55730) mRNA, complete cds.
GenBankBT0000921e-170BT000092.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516160.10.0PREDICTED: myb-like protein A
SwissprotO041921e-104MYB25_ARATH; Transcription factor MYB25
TrEMBLD7LV820.0D7LV82_ARALL; Uncharacterized protein
STRINGXP_010516160.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]