PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g029500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 365aa    MW: 40799.9 Da    PI: 9.5656
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g029500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-17120169155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Csa06g029500.1 120 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 169
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-15120177IPR016177DNA-binding domain
PfamPF008472.1E-9120169IPR001471AP2/ERF domain
SMARTSM003801.6E-29121183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-16121176IPR001471AP2/ERF domain
CDDcd000182.10E-11121176No hitNo description
PROSITE profilePS5103217.332121177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MLDLNLKIFS SYDENQDRKV PFMISTTGEE ESNFSSSNSS TTDSAAGDAF ITFGILKRDD  60
DVTPPPPPPK ETGDLFPVAD ARRSIEFTVE DSHWLNLSAL QRNTQKVLKK SRRGPRSRSS  120
QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAYAAARAY DRAAIKFRGL DADINFVVDD  180
YRHDIDKMKN LNKVEFVQTL RRESASFGRG SSKYKGLALQ KCTQFKTHDQ IHLFQNRGWD  240
AAAIKYNELG KGEGAMKFGA HIKVSYQHRS STYPLTLFFL GNAHNDLELS LGISSSSENM  300
KLTTGDNYKG INWSTMGLFG KQPSIYLPMT TATMKPLKTV AASSGFPFIS MTTSSSSMST  360
CFDP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g029500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762750.0AY576275.1 Arabidopsis thaliana AP2 domain transcription factor (SMZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427236.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
SwissprotQ6PV681e-176SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBLD7LUZ71e-180D7LUZ7_ARALL; Uncharacterized protein
STRINGXP_010427236.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.11e-166AP2 family protein
Publications ? help Back to Top
  1. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]