PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GATA

Protein Properties

Length: 415aa MW: 45798.4 Da PI: 8.2679

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g029270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56	5.4e-18	295	328	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + Csa06g029270.1 295 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 328 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	9.3E-16	289	339	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.53	289	325	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.95E-14	293	352	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.8E-14	293	326	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.04E-13	294	341	No hit	No description
Pfam	PF00320	5.8E-16	295	328	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	295	320	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
SITLHFSPLL LLFFSFLSNL YLSFSLSLLI FSNLIPFLSL SLFSYDPHST KNRGCSNNCK 60 KKMIGQSFPE DLDCGNFFDN MDDLMDFPGG DIDVGFGIGD SDSFPTIWTS HQDTWPAASD 120 PLFSSNTTTN SDSSPELYVP FEDIVKVDGP PSESLVEKKE DSFSTHTDSS SSHSQFRSSS 180 PVSVLESSSS SSQTTNTTSL VLPGKHGRPR TKRPRPPVQD KDRVKDINNV CGADSRLIIR 240 IPKQFLSDHN KMINKKKKKK KAKVTSSSSS SGIDLEVNGN NVDSYSSELH PVRKCMHCEV 300 TKTPQWRLGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FTPALHSNSH KKVAEMRSKR 360 CSDAASPTFT PALHSNSHKK VAEMRSKRCS DGSYITEEND LQELIPNNAY IGVD*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

SITLHFSPLL LLFFSFLSNL YLSFSLSLLI FSNLIPFLSL SLFSYDPHST KNRGCSNNCK  60
KKMIGQSFPE DLDCGNFFDN MDDLMDFPGG DIDVGFGIGD SDSFPTIWTS HQDTWPAASD  120
PLFSSNTTTN SDSSPELYVP FEDIVKVDGP PSESLVEKKE DSFSTHTDSS SSHSQFRSSS  180
PVSVLESSSS SSQTTNTTSL VLPGKHGRPR TKRPRPPVQD KDRVKDINNV CGADSRLIIR  240
IPKQFLSDHN KMINKKKKKK KAKVTSSSSS SGIDLEVNGN NVDSYSSELH PVRKCMHCEV  300
TKTPQWRLGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FTPALHSNSH KKVAEMRSKR  360
CSDAASPTFT PALHSNSHKK VAEMRSKRCS DGSYITEEND LQELIPNNAY IGVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	215	KRPRP
2	254	260	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g029270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF412107	0.0	AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBank	AK317503	0.0	AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBank	AY078029	0.0	AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516023.1	0.0	PREDICTED: GATA transcription factor 8-like
Swissprot	Q9SV30	1e-169	GATA8_ARATH; GATA transcription factor 8
TrEMBL	D7LUX8	1e-168	D7LUX8_ARALL; GATA transcription factor
STRING	XP_010516023.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4975	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	1e-122	GATA family protein

Publications ? help Back to Top
Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720]