PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g028860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 298aa    MW: 33485 Da    PI: 10.2233
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g028860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33e-1638121186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v  L+ea+++++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Csa06g028860.1  38 EWSEGAVSSLLEAYESKWVLRNRAKLKGQDWEDVARHVssraTHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 121
                     5*************************************77666666678899*****************99997......46****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2036123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MENGESNQEN PKSLINHDES PKKPSASSVV VDRLKRDEWS EGAVSSLLEA YESKWVLRNR  60
AKLKGQDWED VARHVSSRAT HTKSPKTQTQ CKNKIESMKK RYRSESATAD GSSWPLYPRL  120
DHLLRGTQPQ PQPQAVLPLN CSVPLLLLEP PSPAVAHPPQ VSYGSNGVGK IPKEDGFKPE  180
NKPEKATEMD TDSSTPVVKT KVRGKKMRRR YKEEKEEIAG SIRWLAEVVM RSERARMETM  240
KEIERMRAEA EDKRAEMDLK RTKIMANTQL EIARLFAVAA SSGQNKGVDS SLRIGRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g028860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0843910.0AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBankAY1400410.0AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBankBT0063220.0BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515966.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLR0FSP90.0R0FSP9_9BRAS; Uncharacterized protein
STRINGXP_010515966.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-166sequence-specific DNA binding transcription factors