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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa06g028820.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
MIKC_MADS |
Protein Properties |
Length: 296aa MW: 34997.2 Da PI: 9.9363 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa06g028820.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93.6 | 8.8e-30 | 72 | 122 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fss++kl+ey+s
Csa06g028820.1 72 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYIS 122
79***********************************************86 PP
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2 | K-box | 77.6 | 3.2e-26 | 134 | 232 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
yq+ s+++++++++e++q+ +kL + ++nL+++++++lGe+Le+L++ eL++Le+++e+ k +R++K + l +qie+++kk+k++q+++k+L
Csa06g028820.1 134 YQSISDVDVWSTQYERMQETKRKLLETNRNLRTQIKQRLGECLEELDYHELRRLEDEMENTFKLVRERKIKSLGNQIETTKKKNKSQQDIQKNLI 228
78899999**************************************************************************************9 PP
K-box 96 kkle 99
++le
Csa06g028820.1 229 HELE 232
9875 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.142 | 64 | 124 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-40 | 64 | 123 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.02E-39 | 65 | 143 | No hit | No description |
SuperFamily | SSF55455 | 6.93E-36 | 66 | 157 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 66 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 66 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-25 | 73 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 86 | 101 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 101 | 122 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.1E-14 | 145 | 231 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.607 | 147 | 237 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 296 aa
Download sequence Send
to blast |
LFIVTQVDPL LLQLYLSLSI SFLFFLKKFY FISFFLLYLF VLSPPNLFSK RFKTKVEKKK 60 KKNMARGKIQ IKRIENQTNR QVTYSKRRNG LFKKAHELTV LCDARVSIIM FSSSNKLHEY 120 ISPNTTTKEI VDLYQSISDV DVWSTQYERM QETKRKLLET NRNLRTQIKQ RLGECLEELD 180 YHELRRLEDE MENTFKLVRE RKIKSLGNQI ETTKKKNKSQ QDIQKNLIHE LELRAEDPHY 240 GLVDNGGDYD SVLGYQIEGS RAYALRYHQN HHHHYPNHAL HAPSASDIIT FHLLE*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms a heterodimer with PISTILLATA that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP. AP3/PI prevents GATA22/GNL and GATA21/GNC expression (PubMed:18417639). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9489703}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Positively regulated by the meristem identity proteins APETALA1 and LEAFY with the cooperation of UFO. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:11283333, ECO:0000269|PubMed:19783648}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU551764 | 0.0 | EU551764.1 Capsella bursa-pastoris APETALA3-like protein (AP3a) mRNA, partial cds. |
Publications
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- Furner I,Ellis L,Bakht S,Mirza B,Sheikh M
CAUT lines: a novel resource for studies of cell autonomy in Arabidopsis. Plant J., 2008. 53(4): p. 645-60 [PMID:18269574] - Jing D, et al.
Two ancestral APETALA3 homologs from the basal angiosperm Magnolia wufengensis (Magnoliaceae) can affect flower development of Arabidopsis. Gene, 2014. 537(1): p. 100-7 [PMID:24334124] - Zhang Y, et al.
A cucumber DELLA homolog CsGAIP may inhibit staminate development through transcriptional repression of B class floral homeotic genes. PLoS ONE, 2014. 9(3): p. e91804 [PMID:24632777] - Nakamura Y,Liu YC,Lin YC
Floral glycerolipid profiles in homeotic mutants of Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2014. 450(4): p. 1272-5 [PMID:24984150] - Behrend A,Borchert T,Hohe A
"The usual suspects"- analysis of transcriptome sequences reveals deviating B gene activity in C. vulgaris bud bloomers. BMC Plant Biol., 2015. 15: p. 8 [PMID:25604890] - Chen Z, et al.
Overexpression of AtAP1M3 regulates flowering time and floral development in Arabidopsis and effects key flowering-related genes in poplar. Transgenic Res., 2015. 24(4): p. 705-15 [PMID:25820621] - Yunus IS, et al.
Phosphatidic acid is a major phospholipid class in reproductive organs of Arabidopsis thaliana. Plant Signal Behav, 2015. 10(8): p. e1049790 [PMID:26179579] - Sun JJ, et al.
CsAP3: A Cucumber Homolog to Arabidopsis APETALA3 with Novel Characteristics. Front Plant Sci, 2016. 7: p. 1181 [PMID:27540391]
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