 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa06g028290.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 140aa MW: 16047.8 Da PI: 5.0931 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa06g028290.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.7 | 0.00019 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C C + Fs+ L H++ H
Csa06g028290.1 21 YICDFCERGFSNAQALGGHMNIH 43
89*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 140 aa
Download sequence Send
to blast |
MNRKYLDRRS YSWSGSQARP YICDFCERGF SNAQALGGHM NIHRKDRAKL RQANLKEEDT 60
EEATTSTIQL EQELIELPFF VDTVRRPTTK EEDDKSDNCV GDEERNKTRI LETALSQSAE 120
VIDLELRLGL DPYKKSTST*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493650 | 1e-141 | AB493650.1 Arabidopsis thaliana At3g53820 mRNA for hypothetical protein, partial cds, clone: RAAt3g53820. |
| GenBank | AL132960 | 1e-141 | AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20. |
| GenBank | CP002686 | 1e-141 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| GenBank | DQ056622 | 1e-141 | DQ056622.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At3g53820) mRNA, complete cds. |
