PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g028290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 140aa MW: 16047.8 Da PI: 5.0931 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C C + Fs+ L H++ H Csa06g028290.1 21 YICDFCERGFSNAQALGGHMNIH 43 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 17 | 47 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.68E-7 | 18 | 47 | No hit | No description |
PROSITE profile | PS50157 | 11.177 | 21 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 23 | 43 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MNRKYLDRRS YSWSGSQARP YICDFCERGF SNAQALGGHM NIHRKDRAKL RQANLKEEDT 60 EEATTSTIQL EQELIELPFF VDTVRRPTTK EEDDKSDNCV GDEERNKTRI LETALSQSAE 120 VIDLELRLGL DPYKKSTST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g028290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493650 | 1e-141 | AB493650.1 Arabidopsis thaliana At3g53820 mRNA for hypothetical protein, partial cds, clone: RAAt3g53820. | |||
GenBank | AL132960 | 1e-141 | AL132960.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20. | |||
GenBank | CP002686 | 1e-141 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ056622 | 1e-141 | DQ056622.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At3g53820) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010515886.1 | 1e-100 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | R0HQC3 | 3e-83 | R0HQC3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010515886.1 | 1e-100 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6991 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 1e-79 | C2H2 family protein |