PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 215aa MW: 23073.3 Da PI: 7.5551

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g023990.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksF++ L H +H Csa06g023990.1 89 YKCSVCGKSFPSYQALGGHKTSH 111 9***********99998888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.0E-4	87	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.5E-9	87	111	No hit	No description
SMART	SM00355	0.0022	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	89	116	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.3E-14	89	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.5E-9	145	172	No hit	No description
Pfam	PF13912	2.8E-12	149	174	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.871	150	172	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.2	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MALDTLNSPT STTTTTNAPP PPFLRCLDQS EPENLESWTK RKRTKRHRID QPNPPSEEEY 60 LALCLLMLAR GSSDHHSPSS PPSDHQKDYK CSVCGKSFPS YQALGGHKTS HRKPVSNNNN 120 EEGNNNTNGS VTNNANIISN GLVGQSGKTH NCSICFKSFP SGQALGGHKR CHYDGGGGSN 180 GNMPSHGFDL NLPADQVSDG KSQLSDDEVT KSVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269\|PubMed:15333755, ECO:0000269\|PubMed:21852415}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g023990.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269\|PubMed:10806347, ECO:0000269\|PubMed:15333755, ECO:0000269\|PubMed:21852415}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132978	1e-87	AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBank	BT029377	1e-87	BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBank	CP002686	1e-87	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010515359.1	1e-158	PREDICTED: zinc finger protein AZF1-like
Swissprot	Q9SSW1	3e-67	AZF1_ARATH; Zinc finger protein AZF1
TrEMBL	R0HHN9	1e-107	R0HHN9_9BRAS; Uncharacterized protein
STRING	XP_010515359.1	1e-158	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3121	22	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	8e-85	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]