PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa06g016930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 40632.5 Da PI: 5.5263 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.6 | 1.9e-47 | 37 | 163 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGf+F+Ptd el+++yLk+k++g + ++ e+i+ev+iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s Csa06g016930.1 37 MFPGFKFSPTDIELISYYLKRKMDGLERSV-EIIPEVEIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS 130 579************************999.89***************778888899************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+k+tLvf+ grapk +t+W+mhey + Csa06g016930.1 131 -GSEVIGTKRTLVFHIGRAPKDGRTEWIMHEYCM 163 .9******************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-52 | 33 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.51 | 37 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 39 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MTPQFLRSQR EKSFDLFLPL SFSYMAAAPV EPAVATMFPG FKFSPTDIEL ISYYLKRKMD 60 GLERSVEIIP EVEIYNFEPW DLPDKSIVKS DSEWFFFCAR GKKYPHGSQN RRATKMGYWK 120 ATGKERNVKS GSEVIGTKRT LVFHIGRAPK DGRTEWIMHE YCMIGVSLDA LVICRLRKNT 180 EFQGAKIQKS PQPSLLPDKH VDTNNAISES ISGWENMVDF YLSSESGQEL LSEIAESSQS 240 SQNPQVPSEE DFYADILRDE IVKLDDPAVS GNTLINVPRL QTESNTTRVL PLPNMVDKQM 300 QSLLQKLPLQ NDTGEENNIS MSNCFIGIYS IKSINRARWD VVVWALVMIA VLVFYLV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-41 | 23 | 179 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-41 | 23 | 179 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-41 | 23 | 179 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-41 | 23 | 179 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-41 | 23 | 179 | 2 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-41 | 23 | 179 | 2 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa06g016930.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352951 | 0.0 | AK352951.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C18. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514768.1 | 0.0 | PREDICTED: NAC domain-containing protein 60 | ||||
Swissprot | Q9LXL9 | 0.0 | NAC60_ARATH; NAC domain-containing protein 60 | ||||
TrEMBL | R0HPC6 | 0.0 | R0HPC6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010514768.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4309 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44290.1 | 0.0 | NAC domain containing protein 60 |
Publications ? help Back to Top | |||
---|---|---|---|
|