PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g012640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 465aa    MW: 52421.5 Da    PI: 8.3198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g012640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.8e-07290312123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C++Cg+sF r+ +L +H+r+H
  Csa06g012640.1 290 YDCNICGESFVRSISLSNHQRVH 312
                     88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-586113No hitNo description
SMARTSM003551.589111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76289116IPR007087Zinc finger, C2H2
PfamPF139124.8E-989113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-8185208No hitNo description
SMARTSM0035513186207IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-4186205IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-8285312No hitNo description
SMARTSM003550.0037290312IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.464290317IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-7290312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280292312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSLKEHEMEE AAMSLVMLSE RVCDFDLPPG DDDSMDLDKL IPIQKKSLGC VESIQDFREM  60
VSHSGFEKST TCSDDVVVLR SDLQSNSSHK CNVCGNSFGC YQALGGHKRL HRSIKEKLES  120
KKENTKDDSS LFFGSSEDKK IVSIPSSFEV FQKEKILDCV VSRQDFRELL PSVCKFQKRP  180
ESSSSYKCKV CDKSFECLQG LDGHKGHNSL LEREKKYIGD NKSLSYSAEA KKTVSKPSSF  240
EVSQEKVLHC VELKQDFSEL LSYSSKTSFS ALPSTLRSEL QKDTQSKSSY DCNICGESFV  300
RSISLSNHQR VHRPNREKLS RKRKYTKDHN PLSDSLQVSQ GKILHCVESK QDFSELLSHP  360
GFDKSISCSI IPLSSSLRSK SQSSISTRLF FVAVSLVMLS QRVYDFASIR NLPLGGDDVM  420
DLEIKPLRSK LQKKTHSGYK CCKCDKEFWV LSSSRWSPKT SQID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g012640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514648.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 571-like
TrEMBLR0HN181e-144R0HN18_9BRAS; Uncharacterized protein
STRINGXP_010514648.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.16e-92C2H2 family protein