PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g011360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 265aa    MW: 30207.1 Da    PI: 10.0564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g011360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-152469147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W   Ed +l ++v+  G+ +W+ Ia+ m+ gRt+k+c++rw++ 
   Csa06g011360.1 24 RGHWRISEDTQLMELVAVNGPQNWNHIAENMQ-GRTGKSCRLRWFNQ 69
                     789999**************************.***********996 PP
2Myb_DNA-binding46.11.1e-1477120247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ +  gRt++ +k++w+ +
   Csa06g011360.1  77 RAFSVEEEERLLAAHRAFGNK-WAMIAKIFT-GRTDNALKNHWHVL 120
                      689******************.********9.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2091970IPR017930Myb domain
SMARTSM007173.5E-102372IPR001005SANT/Myb domain
SuperFamilySSF466892.52E-2624117IPR009057Homeodomain-like
PfamPF002491.7E-142469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-232577IPR009057Homeodomain-like
CDDcd001671.62E-92768No hitNo description
PROSITE profilePS5129424.42871125IPR017930Myb domain
SMARTSM007172.4E-1275123IPR001005SANT/Myb domain
PfamPF002493.2E-1177120IPR001005SANT/Myb domain
CDDcd001679.01E-978121No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1978125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQKKSDDDLK KKKKKQSGSR VCSRGHWRIS EDTQLMELVA VNGPQNWNHI AENMQGRTGK  60
SCRLRWFNQL DPRINKRAFS VEEEERLLAA HRAFGNKWAM IAKIFTGRTD NALKNHWHVL  120
MARKMRQQSS SYVQRFNGST HKPNTDHKIF NLSPGNVDDE DINLKKYSWE MLKEGTTNLK  180
AQYLQEEYCS SRMPMQGPHH HYSTFPADSL ALTLHVSIQE PSSSSSSSSS LSLPSSSTAE  240
HTMVTRYIET TKPPAFIDFL GVGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-29241254105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g011360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727321e-170AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502911.10.0PREDICTED: transcription factor WER isoform X2
RefseqXP_019102225.10.0PREDICTED: transcription factor MYB35-like
TrEMBLR0FTE61e-163R0FTE6_9BRAS; Uncharacterized protein
STRINGXP_010514619.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-157myb domain protein 110