PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g005470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 660aa MW: 72175.2 Da PI: 4.5789 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.6 | 1.7e-14 | 147 | 195 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 s+ GVr++k +g+W+AeIr+p + +r +lg++ t e+Aa a+ a ++++ Csa06g005470.1 147 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAASAYAAKKLEF 195 7899*****9.**********72....36******************9988775 PP | |||||||
2 | AP2 | 45.6 | 1.7e-14 | 443 | 491 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 s+ GVr++k +g+W+AeIr+p + +r +lg++ t e+Aa a+ a ++++ Csa06g005470.1 443 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAASAYAAKKLEF 491 7899*****9.**********72....36******************9988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-9 | 147 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-18 | 147 | 193 | No hit | No description |
SMART | SM00380 | 3.3E-13 | 148 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.136 | 148 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-14 | 148 | 195 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-6 | 149 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-19 | 151 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 171 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-18 | 443 | 489 | No hit | No description |
Pfam | PF00847 | 5.8E-9 | 443 | 491 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.136 | 444 | 501 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-13 | 444 | 498 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-14 | 444 | 491 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-19 | 447 | 494 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MHLRPKRTCS GVNNFEGLFD IMAERKKRSS VQTNKPYKKP MKKKSLQLNH LPGLSEDLKT 60 MRKIRFVVND PYATDYSSSE EDERAQRRKR YVCEIDLPFA QAAATQAESQ SSFCQESTNN 120 NNGVTRTKTK TSACSKKVLS SKPTSVSKPV GVRQRKWGKW AAEIRHPITK TRTWLGTYET 180 LEQAASAYAA KKLEFDALAA ATSAASSNNV SENALSDSNM SGSLISATGS NVEAVSSNNL 240 DKKLLDSTID PEAGESKKAS FGFDFADLQI PEMGCFIDES LIPNACELDF LLTEENNQLL 300 DDYCGIDDLD IIGLECDGPS ELPDYDFSDV EIDLGLIGNT IDNIAEAVDL RGSKKPLTDR 360 NRCSFVKSLX DYSSSEEDER AQRRKRYVCE IDLPFAQAAA TQAESQSSFC QESTNNNNGV 420 TRTKTKTSAC SKKVLSSKPT SVSKPVGVRQ RKWGKWAAEI RHPITKTRTW LGTYETLEQA 480 ASAYAAKKLE FDALAAATSA ASSNNVSENA LSDSNMSGSL ISATGSNVEA VSSNNLDKKL 540 LDSTIDPEAG ESKKASFGFD FADLQIPEMG CFIDESLIPN ACELDFLLTE ENNQLLDDYC 600 GIDDLDIIGL ECDGPSELPD YDFSDVEIDL GLIGNTIDKF VFVDHIATTT TTPLNIACP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g005470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514217.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
Swissprot | Q9LUA2 | 1e-154 | EF119_ARATH; Ethylene-responsive transcription factor ERF119 | ||||
TrEMBL | R0FQB4 | 0.0 | R0FQB4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010514217.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2537 | 26 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25890.2 | 1e-145 | ERF family protein |