PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g005470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 660aa    MW: 72175.2 Da    PI: 4.5789
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g005470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-14147195153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     s+  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+ a ++++
  Csa06g005470.1 147 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAASAYAAKKLEF 195
                     7899*****9.**********72....36******************9988775 PP
2AP245.61.7e-14443491153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     s+  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+ a ++++
  Csa06g005470.1 443 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAASAYAAKKLEF 491
                     7899*****9.**********72....36******************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-9147195IPR001471AP2/ERF domain
CDDcd000181.92E-18147193No hitNo description
SMARTSM003803.3E-13148202IPR001471AP2/ERF domain
PROSITE profilePS5103218.136148205IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-14148195IPR016177DNA-binding domain
PRINTSPR003675.2E-6149160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-19151198IPR001471AP2/ERF domain
PRINTSPR003675.2E-6171187IPR001471AP2/ERF domain
CDDcd000181.92E-18443489No hitNo description
PfamPF008475.8E-9443491IPR001471AP2/ERF domain
PROSITE profilePS5103218.136444501IPR001471AP2/ERF domain
SMARTSM003803.3E-13444498IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-14444491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-19447494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MHLRPKRTCS GVNNFEGLFD IMAERKKRSS VQTNKPYKKP MKKKSLQLNH LPGLSEDLKT  60
MRKIRFVVND PYATDYSSSE EDERAQRRKR YVCEIDLPFA QAAATQAESQ SSFCQESTNN  120
NNGVTRTKTK TSACSKKVLS SKPTSVSKPV GVRQRKWGKW AAEIRHPITK TRTWLGTYET  180
LEQAASAYAA KKLEFDALAA ATSAASSNNV SENALSDSNM SGSLISATGS NVEAVSSNNL  240
DKKLLDSTID PEAGESKKAS FGFDFADLQI PEMGCFIDES LIPNACELDF LLTEENNQLL  300
DDYCGIDDLD IIGLECDGPS ELPDYDFSDV EIDLGLIGNT IDNIAEAVDL RGSKKPLTDR  360
NRCSFVKSLX DYSSSEEDER AQRRKRYVCE IDLPFAQAAA TQAESQSSFC QESTNNNNGV  420
TRTKTKTSAC SKKVLSSKPT SVSKPVGVRQ RKWGKWAAEI RHPITKTRTW LGTYETLEQA  480
ASAYAAKKLE FDALAAATSA ASSNNVSENA LSDSNMSGSL ISATGSNVEA VSSNNLDKKL  540
LDSTIDPEAG ESKKASFGFD FADLQIPEMG CFIDESLIPN ACELDFLLTE ENNQLLDDYC  600
GIDDLDIIGL ECDGPSELPD YDFSDVEIDL GLIGNTIDKF VFVDHIATTT TTPLNIACP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g005470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514217.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
SwissprotQ9LUA21e-154EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLR0FQB40.0R0FQB4_9BRAS; Uncharacterized protein
STRINGXP_010514217.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-145ERF family protein