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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa06g001330.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
HD-ZIP |
Protein Properties |
Length: 202aa MW: 22823.7 Da PI: 7.565 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa06g001330.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58 | 1.6e-18 | 66 | 120 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++t+eq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k
Csa06g001330.1 66 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALATHLMLRPRQIEVWFQNRRARSK 120
78889************************************************98 PP
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2 | HD-ZIP_I/II | 118.4 | 4e-38 | 66 | 154 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
Csa06g001330.1 66 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALATHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 154
69*************************************************************************************94 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MAILPENSSN LDLTISVPGF SSSPPSVSDE GSGGGREQLK LDMNRVPSSE DGDDEEFSHD 60 GSAPPRKKLR LTREQSRLLE DSFRQNHTLN PKQKEALATH LMLRPRQIEV WFQNRRARSK 120 LKQTEMECEY LKRWFGSLTE QNHRLHREVE ELRAMKVGPP TVNSASSLTM CPRCERVTTP 180 ASPASMAVPA REKFPPQERE D*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 114 | 122 | RRARSKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ431181 | 0.0 | AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene). |