PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g095930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 393aa    MW: 44148 Da    PI: 6.4897
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g095930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.8e-06326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k+ lC+ffa  G C  Gd C F+H+
  Csa05g095930.1  3 KRILCKFFAH-GACLKGDHCEFSHD 26
                    889***6666.*************5 PP
2zf-CCCH26.61e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f++r G+C+yG+rC++ H+
  Csa05g095930.1 34 ICTFYQR-GICSYGSRCRYEHV 54
                    7**9999.***********997 PP
3zf-CCCH201.3e-06130152326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ +a+ G C++Gd C+ +Hg
  Csa05g095930.1 130 QPICS-YAAAGDCPRGDECPHIHG 152
                     68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7092956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-43453IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793127154IPR000571Zinc finger, CCCH-type
SMARTSM003560.029128153IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.04E-13186260No hitNo description
Gene3DG3DSA:3.30.40.109.5E-10189255IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.0011195255No hitNo description
PfamPF000974.5E-7196253IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.342196254IPR001841Zinc finger, RING-type
SMARTSM001845.5E-7196253IPR001841Zinc finger, RING-type
PROSITE patternPS005180220229IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.197283312IPR000571Zinc finger, CCCH-type
SMARTSM003560.16283311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGDH CEFSHDWKDP TNNICTFYQR GICSYGSRCR YEHVKASRPH  60
PSASSSSRSS PASASNPLTC AFLPGVSDRD LIPVLSSCLK PTWDLDSLHQ DPLDEVNNTF  120
NPGTAKPEDQ PICSYAAAGD CPRGDECPHI HGNICPTCGK CCLHPFRPDE REEHKKVCEK  180
KHKQLEALKL SQEIECCVCL ERVLSKPTPA ERKFGLLTEC DHAFCIACIR NWRSSSPSTG  240
MDVNSTLRAC PICRKLSYFV VPSVIWFSAP EEKKEIMDNY REKLRSIDCK HFNFGDGNCP  300
FGTSCFYKHT VKPGSYAWKY HRPPPRRPRP SGSNFSDVDT LVNMIGNIIS EGEYGPIGFE  360
DTDDDELTTT DMMMLLMHMD IESEDSSNED IY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g095930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035760.0GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512785.20.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1J3FGX60.0A0A1J3FGX6_NOCCA; Zinc finger CCCH domain-containing protein 69
TrEMBLA0A1J3J5L10.0A0A1J3J5L1_NOCCA; Zinc finger CCCH domain-containing protein 69
STRINGXP_010512785.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-128C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]