PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g094180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 307aa    MW: 34732.8 Da    PI: 7.923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g094180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.11.8e-3325130199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kv tpsdv+k++rlv+pk++ae++       +++++++  l +ed+sg+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d+ +
  Csa05g094180.1  25 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnstSNDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSGN 119
                     89****************************999666678899************************************************99888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  Csa05g094180.1 120 KDKLYIDWRRR 130
                     999*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-4313136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-3222133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-2623119No hitNo description
PROSITE profilePS5086314.57925131IPR003340B3 DNA binding domain
SMARTSM010199.5E-2625131IPR003340B3 DNA binding domain
PfamPF023621.0E-3025130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMMNQEEEKP INEEASSSME REHMFDKVVT PSDVGKLNRL VIPKQHAERY FPLDNSTSND  60
SNKGLLLNFE DRSGNSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRDSGNK  120
DKLYIDWRRR PKIPDHHQAS YHHQFAGAMF PRFYTFPHHP QMPANYETHN LYHRFHQRDL  180
GIGYYVRSME RSNPTAVIES VPVMMQRRAQ VASRGEKRLR LFGVDMECGG GGGGGGSVNS  240
TEEESSSSGG SIPRGGVSMV GAGSLLQLRL VSSDDESLVA MEAASLEDHH FFTKKGKSSL  300
SFDLDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-63201333116B3 domain-containing transcription factor NGA1
5os9_B3e-63201333116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g094180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8737320.0FJ873732.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA2 (NGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512577.10.0PREDICTED: B3 domain-containing transcription factor NGA2
SwissprotQ9M2680.0NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A384KUR30.0A0A384KUR3_ARATH; NGA2
TrEMBLC3VMM30.0C3VMM3_ARATH; NGATHA2
STRINGXP_010512577.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-177B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]