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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g093540.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 278aa MW: 31327.8 Da PI: 4.4139 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.8e-19 | 13 | 101 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk ++++s + +p +f+e+ + + t +l+ + gr W+v + +k ++++++t+GW++F+++++L +g+ ++F +dg+++f v+ Csa05g093540.2 13 FFKLY--VSHTASESFAIPLSFMEHLADP--LPNTAKLQGTGGRDWTVSM--KKIRDGVYFTAGWSKFAQDHELVDGEYLTFVYDGNRTF--EVS 99 56666..334444559*******666655..889****************..*********************************98888..777 PP EE CS B3 96 vf 97 vf Csa05g093540.2 100 VF 101 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-22 | 11 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-22 | 11 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.662 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.92E-18 | 11 | 101 | No hit | No description |
Pfam | PF02362 | 2.6E-16 | 13 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-20 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-8 | 178 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-6 | 178 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.7 | 182 | 272 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MAEHDDDVLL PRFFKLYVSH TASESFAIPL SFMEHLADPL PNTAKLQGTG GRDWTVSMKK 60 IRDGVYFTAG WSKFAQDHEL VDGEYLTFVY DGNRTFEVSV FGRLGCRETR AEAETLELSG 120 SSSDSEEDEE EPSTDVEYDI SLGEDEEISQ SLSPLEEEET ESDAAAVFEG NVDMKALTNP 180 HFPTTLKDRN TELIIPASVV RENELIFGDS VKYIDGEGTL VGLRCKWAVD TVRFKGWNRI 240 CRRNKLEKHQ DTVECELLHD REKMVHSIRV HVIRGTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-22 | 12 | 106 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g093540.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512501.1 | 0.0 | PREDICTED: B3 domain-containing protein REM20-like | ||||
Swissprot | Q8LAV5 | 1e-116 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | R0HPM7 | 1e-153 | R0HPM7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010512501.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 6e-58 | B3 family protein |
Publications ? help Back to Top | |||
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