PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g092310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 371aa    MW: 41176 Da    PI: 4.9934
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g092310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1770119255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++g
  Csa05g092310.1  70 SYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 119
                     6*****998.**********843...6********************9998877 PP
2AP255.41.5e-17171220255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++g
  Csa05g092310.1 171 SYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 220
                     6*****998.**********843...6********************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-2070127IPR016177DNA-binding domain
PfamPF008475.5E-1270119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-3070128IPR001471AP2/ERF domain
SMARTSM003803.9E-3470133IPR001471AP2/ERF domain
PROSITE profilePS5103222.82770127IPR001471AP2/ERF domain
PRINTSPR003673.7E-107182IPR001471AP2/ERF domain
CDDcd000182.70E-2971129No hitNo description
PRINTSPR003673.7E-1093109IPR001471AP2/ERF domain
PROSITE profilePS5103222.827171228IPR001471AP2/ERF domain
PfamPF008475.5E-12171220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-30171229IPR001471AP2/ERF domain
SMARTSM003805.7E-34171234IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-20171228IPR016177DNA-binding domain
CDDcd000182.70E-29172230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEKQINLESS ATTHHDDNNA SAITISSSSA VTSSSESWTT SSKRSLVQDN DAGGKRRKSN  60
VSDDNKNQTS YRGVRMRSWG KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVASLAIKGN  120
SGYLNFPELS AVTSSSESWT TSSKRSLVQD NDAGGKRRKS NVSDDNKNQT SYRGVRMRSW  180
GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVASLAIKG NSGYLNFPEL SGLLPRPVSC  240
SPKDIQAAAT KAAETTTWQE PAIDDEKLPE PEADELSHSY ELLSTITTTT ADQSSTSSSF  300
VFSSDTSETS STDKESNEET VFDLPDLFTD GLMNRNDAFC LCNDTFTWQL YGEEDVGFRF  360
EEEPFIWQND *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14682291273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g092310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386461e-146AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankAY5608481e-146AY560848.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g60490) mRNA, complete cds.
GenBankBT0294581e-146BT029458.1 Arabidopsis thaliana At3g60490 mRNA, complete cds.
GenBankCP0026861e-146CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413552.11e-134PREDICTED: ethylene-responsive transcription factor ERF035-like
SwissprotQ9M2101e-113ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLD7LRR01e-118D7LRR0_ARALL; Uncharacterized protein
STRINGXP_010512376.11e-143(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-101ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]