PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g090000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 262aa MW: 29962.5 Da PI: 6.2373 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.2 | 1.6e-29 | 95 | 182 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p Csa05g090000.1 95 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 182 9******************************************999..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-27 | 95 | 182 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MMMGIPVELE VTTTVENHNE MGESSGQAMI EQDDDDDNHN NEMGDNSGQG QAMLEQDEKV 60 NPDSLPLAVA DMADNQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS KLSRSRHDGS 120 PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCRAMILIR KENSGKWVIT KFVKEHNHPL 180 MPGRVRRGCI YDQYPNEHDK IQELMQQLAA EKKRAATYKR HLEMLFEQIE QHNESLSKRI 240 QHIVDNVRNL EQRDHQQNHQ V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g090000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058089 | 0.0 | AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds. | |||
GenBank | AY143081 | 0.0 | AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512208.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Refseq | XP_019101699.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
TrEMBL | R0FPX5 | 1e-180 | R0FPX5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010512207.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-170 | FAR1 family protein |