PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g086270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 354aa    MW: 40516.7 Da    PI: 7.4049
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g086270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF658.1e-211353545
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    n   rq t++kRr+gi+KKA+ELS+LCd++v +++fs+tgk
  Csa05g086270.1 13 NMNARQCTYAKRRHGIMKKAKELSILCDIDVVLLMFSPTGK 53
                    6778***********************************98 PP
2K-box16.73.1e-071342012088
           K-box  20 elakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                     +++ L+ +++ + +  R   + +L+++ ++ +LqqLe+ L  sl +i ++K  +   q ++l   e ++q
  Csa05g086270.1 134 KVRFLRTQLSDIHT--RLSYWTNLDNInNVDDLQQLEDSLRLSLAQISARKASMPQHQQRQLMSSECKNQ 201
                     44444444444443..566778888873589********************9988877777666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.413153IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-26160IPR002100Transcription factor, MADS-box
CDDcd001201.53E-20253No hitNo description
SuperFamilySSF554551.7E-23293IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-15323IPR002100Transcription factor, MADS-box
PfamPF003196.9E-181354IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-153859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.73121220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRVKLKIMK LRNMNARQCT YAKRRHGIMK KAKELSILCD IDVVLLMFSP TGKASLCLGK  60
NSIGEVIAKF AQLTPQERAK RKLENLEALK KMFMKLDHDV DISEFLDRRC CCWVLLMWLI  120
FVNSTPTVEV LSEKVRFLRT QLSDIHTRLS YWTNLDNINN VDDLQQLEDS LRLSLAQISA  180
RKASMPQHQQ RQLMSSECKN QLQTEIDIDF GIEMEQQLEN FSWVRTTDEN MNVPIKEENP  240
YLQVHQMYKD ITCSASSSLG NYSGLSTPKL ETGSIPGIPA DPSLQFGNPS FLNDQKLQKL  300
AEWNLLGSPA FSQVLEAFHK PQLGGNKYNW TSPETLPYVA IFDDPLYFWP SEQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g086270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941121e-165AB094112.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, partial cds.
GenBankAB1150131e-165AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512000.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X3
SwissprotQ1PFA41e-76AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLD7KXG60.0D7KXG6_ARALL; Predicted protein
STRINGXP_010511995.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.10.0AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]