PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g084920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 529aa    MW: 59751.9 Da    PI: 4.4646
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g084920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.5e-071457340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + + +++++C  ++ +lC+ C  + H+       H++v
  Csa05g084920.1 14 ARACDSCVKRRARWYCAADDAFLCHGCDGSVHSAnplarrHERV 57
                    578*****************************657888888876 PP
2CCT682.6e-23479522144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Csa05g084920.1 479 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 522
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4951259IPR000315B-box-type zinc finger
SMARTSM003362.3E-91259IPR000315B-box-type zinc finger
PfamPF006437.7E-61457IPR000315B-box-type zinc finger
CDDcd000213.39E-81559No hitNo description
PROSITE profilePS5101716.083479521IPR010402CCT domain
PfamPF062037.4E-18479521IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHGC DGSVHSANPL ARRHERVRLK  60
TASTGKHRHA DVSSPSPPHQ ATWHQGFTRK ARTPRGGKKG HTMVFHDLVP EMSTEDQMES  120
YEVEGQLIFE VPVMNPMVEE QCFNESVETK IEFPMMPVCF KSSDEEDEDN AESCLNGLFP  180
TDMELAQFTA DVETLLGGGI ERDFHPTEDL GLGEMLKIEK EEVEEEEGVA TRDVCDLNEL  240
IFEVPVMNPM VEEQCFNESV ETKIEFPMMP VCFKSSDEED EDNAESCLNG LFPTDMELAQ  300
FTADVETLLG GGIERDFHPT EDLGLGEMLK IEKEEVEEEE GVATRDVCDL NEVDETSPFE  360
ISFDYEYASK STYEEEEEDN EKEDVMKNVM DMGVNEMRGK IKEEKKEKAL MLRLDYESVL  420
STWGGQGIPW TAQKPSEIDL DMVCCPTDSM GESGADQAHH YNHFRGLGFH MGEAGDGGRE  480
ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RSSIAAAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489505RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g084920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470801.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X1
RefseqXP_010470802.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like isoform X2
SwissprotQ8LG761e-152COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLR0GHM31e-175R0GHM3_9BRAS; Uncharacterized protein
STRINGXP_010470801.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-148B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]