PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g083480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 325aa    MW: 35519.7 Da    PI: 8.314
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g083480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12240264226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++tGtC+y d C+FaHg
  Csa05g083480.1 240 KTELCNKWQETGTCPYDDHCQFAHG 264
                     9***********************8 PP
2zf-CCCH21.25.1e-07277302126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++ +C+yG rC+F H+
  Csa05g083480.1 277 YKTEVCRMVLAGDICPYGHRCHFRHS 302
                     9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-17233271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10235270IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906238266IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-10240264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-13272305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9272307IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272276304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MENEIAPFNY SGSSAGVVGI KKSQGDSSCG GGGGGGVVTS SLFSDQLYKS SRNIMQQRQD  60
MVNREALCYT RLHEASLEAE ALRLENTELR SMNRHLKNEL NSLIRSSIQS RLDSDRVPLR  120
MLSNLSIGGK DADGVENQNR TVKRDDVSDE SPTSVMENED MNRSSLPKSI SVRSSGYSKA  180
SQGGGGAAQS GKSRGTVPKT GTCGGQLSTT QKVYVRGGGG KKEDQEEEIE VEVYNQGMTK  240
TELCNKWQET GTCPYDDHCQ FAHGIKELRP VIRHPRYKTE VCRMVLAGDI CPYGHRCHFR  300
HSLSEQEKLV AAGYKPKSSL KLLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22240305570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g083480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260770.0BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankDQ0565140.0DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511807.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-167C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLR0GI950.0R0GI95_9BRAS; Uncharacterized protein
STRINGXP_010511807.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-143C3H family protein