PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g083390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 362aa    MW: 40488.3 Da    PI: 4.6856
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g083390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33231152102
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k ye+++d++++++isws +  nsfv+ld++ f+ ++LpkyFkhsnf+SF+RQLn+YgFkkv+ ++         weF+++ F kg+k+ll+
  Csa05g083390.1  23 FLRKCYEMVDDSSTDSIISWStSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFKKVDADR---------WEFANDGFVKGQKDLLK 108
                     9********************7778*****************************************999.........***************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     ++ r+k+
  Csa05g083390.1 109 NVIRRKN 115
                     *999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-3417108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.25E-3118113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5219113IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2823113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVKSAAADDG GGGGGGSSSV APFLRKCYEM VDDSSTDSII SWSTSADNSF VILDTTVFSV  60
QLLPKYFKHS NFSSFIRQLN IYGFKKVDAD RWEFANDGFV KGQKDLLKNV IRRKNVQSNE  120
HIKQESKSTT DDGQGKPEKS GLWKEVDILK GDKQVLAQEL IKVRQYQEMT DTKMLNLKDR  180
VQGMEEKSES ISPVASAKGE KQWRKAGEGA TIVEEVTDEG DSNSTGLPLI TYQPPSDNGT  240
SKSSSKDLND FLRNADMMKF CLDENHVPLI IPDLYDDGAW EKLLLLSPSK KKTKKQQENS  300
LKKGKDDDTL EEMESDKSRL LELISEEMEK SDDFEYGQLT PERSRNLDIM TEQMSLLASN  360
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241111317129Heat shock factor protein 1
5d5v_B2e-241111317129Heat shock factor protein 1
5d5v_D2e-241111317129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g083390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518661e-165AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943961e-165AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470753.10.0PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-8-like
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLR0IB460.0R0IB46_9BRAS; Uncharacterized protein
STRINGXP_010470753.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-172heat shock transcription factor A8