PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g081220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 976aa    MW: 108749 Da    PI: 5.5805
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g081220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.79.3e-53111272117
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e+  iL+n+e+ +lt  +++rp+sgsl+L+nr+++++frkDG++w+kk+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+
  Csa05g081220.1  11 YQEaQTRWLKPPEVQFILQNHERLTLTDVAPQRPTSGSLFLFNRRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNAEALTCYYAHGEHDPTFR 105
                     56769****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylev 117
                     rr+yw+L+ e+e+ivlvhy++v
  Csa05g081220.1 106 RRIYWMLDPEYEHIVLVHYRDV 127
                     ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.3757133IPR005559CG-1 DNA-binding domain
SMARTSM010766.7E-8010128IPR005559CG-1 DNA-binding domain
PfamPF038593.2E-4613127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.4E-5404494IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.83E-15409494IPR014756Immunoglobulin E-set
CDDcd001029.12E-6409494No hitNo description
PfamPF018334.8E-4409493IPR002909IPT domain
Gene3DG3DSA:1.25.40.209.0E-15605700IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.09E-15605701IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.141606698IPR020683Ankyrin repeat-containing domain
CDDcd002048.87E-14611698No hitNo description
PfamPF127961.9E-7629699IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.766639671IPR002110Ankyrin repeat
SMARTSM002480.0021639668IPR002110Ankyrin repeat
SMARTSM002483000678707IPR002110Ankyrin repeat
SMARTSM0001520756778IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.169757785IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-8757865IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.2759776IPR000048IQ motif, EF-hand binding site
SMARTSM000150.51813835IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627814843IPR000048IQ motif, EF-hand binding site
PfamPF006120.0042815834IPR000048IQ motif, EF-hand binding site
SMARTSM000159.2E-5836858IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.956837861IPR000048IQ motif, EF-hand binding site
PfamPF006127.1E-5839858IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MQSEYDISTL YQEAQTRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF  60
RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV  120
LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD  180
LEGSASSSEL GQALKKLKEQ LSIGDDHVDS LVQPYIQPES LDSLQFLECS NDIDHFAQPP  240
TTVYQRPENN RLERCYGGNF GAQYHAKNDS NRLERCYGGY VGAQYHSSNL MLVKNDSGGT  300
GGSGDQGSES WKEVLEACAL NSEESTPSSA KGLLAGLQED SNWSYSNQVD QSTLLFPQDL  360
GSFKVPASYS ALVAPETNGE YSRMMDDGEL GLPLEQEIRL TGAYNQKFTI QDISPEWGYA  420
NETTKVIIIG SFPCSPAEPM WCCMFGSAEV PCEIIKEGVI RCEAPPACGP GKVNLCITSG  480
DGLSCSEIRE FEYRGKPDTC CLKCSRPQSS DMSTSPDELI ILARFVQTLL SDRSSEGESN  540
SELGNDKLLK KLKADDDQWT HVIAEVLNGS SSSTKTVDWL LQELFKDKLD VWLSSRFQDR  600
GFLSKKEQGI IHMIAGLGFE WALYPILDHG VSVDFRDING WSALHWAARF GSEKMVAALI  660
ASGASAGAVT DPTQQDPNGK TAASIASSYG HKGIAGYLSE VALTNHLSSL TLEETEISKD  720
SAQVQAEITV NSISEPGPSG SEDQLSMEKT LAAVRNAAQA ATRIQAAFRA HSFRKRKQRE  780
AAMAACLQEY GIYCEDIEGI AAMSKRTFGK VKNYHSAALS IQKKYRGYKG RKEFLELRQK  840
VVKIQAHVRG YQTRKHYRVI CWAVGVLDKV VLRWRRKGVG LRGFRPDVET TEDSEDEDIL  900
KVFRKQKVDG AVNEAFSRVL SMANSPEARQ QYHRVLKRYC QTKAELGKTE TLLGDDDDGL  960
FDIADMEFDS LFTLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g081220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100260.0AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511653.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLR0GG070.0R0GG07_9BRAS; Uncharacterized protein
STRINGXP_010511652.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]