PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g081220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 976aa MW: 108749 Da PI: 5.5805 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.7 | 9.3e-53 | 11 | 127 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e+ iL+n+e+ +lt +++rp+sgsl+L+nr+++++frkDG++w+kk+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+ Csa05g081220.1 11 YQEaQTRWLKPPEVQFILQNHERLTLTDVAPQRPTSGSLFLFNRRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNAEALTCYYAHGEHDPTFR 105 56769****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ e+e+ivlvhy++v Csa05g081220.1 106 RRIYWMLDPEYEHIVLVHYRDV 127 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.375 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.7E-80 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.2E-46 | 13 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.4E-5 | 404 | 494 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.83E-15 | 409 | 494 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 9.12E-6 | 409 | 494 | No hit | No description |
Pfam | PF01833 | 4.8E-4 | 409 | 493 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 9.0E-15 | 605 | 700 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.09E-15 | 605 | 701 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.141 | 606 | 698 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 8.87E-14 | 611 | 698 | No hit | No description |
Pfam | PF12796 | 1.9E-7 | 629 | 699 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.766 | 639 | 671 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0021 | 639 | 668 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3000 | 678 | 707 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 20 | 756 | 778 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.169 | 757 | 785 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 3.45E-8 | 757 | 865 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.2 | 759 | 776 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.51 | 813 | 835 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 814 | 843 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0042 | 815 | 834 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 9.2E-5 | 836 | 858 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.956 | 837 | 861 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.1E-5 | 839 | 858 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 976 aa Download sequence Send to blast |
MQSEYDISTL YQEAQTRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF 60 RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV 120 LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD 180 LEGSASSSEL GQALKKLKEQ LSIGDDHVDS LVQPYIQPES LDSLQFLECS NDIDHFAQPP 240 TTVYQRPENN RLERCYGGNF GAQYHAKNDS NRLERCYGGY VGAQYHSSNL MLVKNDSGGT 300 GGSGDQGSES WKEVLEACAL NSEESTPSSA KGLLAGLQED SNWSYSNQVD QSTLLFPQDL 360 GSFKVPASYS ALVAPETNGE YSRMMDDGEL GLPLEQEIRL TGAYNQKFTI QDISPEWGYA 420 NETTKVIIIG SFPCSPAEPM WCCMFGSAEV PCEIIKEGVI RCEAPPACGP GKVNLCITSG 480 DGLSCSEIRE FEYRGKPDTC CLKCSRPQSS DMSTSPDELI ILARFVQTLL SDRSSEGESN 540 SELGNDKLLK KLKADDDQWT HVIAEVLNGS SSSTKTVDWL LQELFKDKLD VWLSSRFQDR 600 GFLSKKEQGI IHMIAGLGFE WALYPILDHG VSVDFRDING WSALHWAARF GSEKMVAALI 660 ASGASAGAVT DPTQQDPNGK TAASIASSYG HKGIAGYLSE VALTNHLSSL TLEETEISKD 720 SAQVQAEITV NSISEPGPSG SEDQLSMEKT LAAVRNAAQA ATRIQAAFRA HSFRKRKQRE 780 AAMAACLQEY GIYCEDIEGI AAMSKRTFGK VKNYHSAALS IQKKYRGYKG RKEFLELRQK 840 VVKIQAHVRG YQTRKHYRVI CWAVGVLDKV VLRWRRKGVG LRGFRPDVET TEDSEDEDIL 900 KVFRKQKVDG AVNEAFSRVL SMANSPEARQ QYHRVLKRYC QTKAELGKTE TLLGDDDDGL 960 FDIADMEFDS LFTLP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g081220.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY510026 | 0.0 | AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511653.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4-like isoform X2 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | R0GG07 | 0.0 | R0GG07_9BRAS; Uncharacterized protein | ||||
STRING | XP_010511652.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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