PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g080140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 346aa    MW: 38902.1 Da    PI: 4.7912
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g080140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.71.2e-39842252128
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssas 83 
                     a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aike ++              + + ++e+e+e++++ ++
  Csa05g080140.1  84 AVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQEkklnngnedfgdnGGDVEEEVEEEEEEEDGD 178
                     89**************************************************************7776655544444333334444444444444 PP

             TCP  84 nsssgkaaksaa.kskksqksaasalnlak.esrakarararertre 128
                     ns    +++++  k+   ++++a ++++++  sr +a+ +a+er+r+
  Csa05g080140.1 179 NSLVYGSSPESCgKKVLCEAKKADKRKKNNeRSRDNAKGKAKERSRK 225
                     44444444444446666666666556665556676677777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3785225IPR005333Transcription factor, TCP
PROSITE profilePS5136935.28686144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MMSSSNKDGN NHGVYPLSLY LSSLPGHQDI IRNPYNQQLT ASPGQMVSAV PESLIDYMAF  60
NSNDAVNQRQ GFELPELSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDM  120
LGFDKASKTL DWLLKKSRKA IKEVVQEKKL NNGNEDFGDN GGDVEEEVEE EEEEEDGDNS  180
LVYGSSPESC GKKVLCEAKK ADKRKKNNER SRDNAKGKAK ERSRKMAYDN PETVSDITQS  240
ETLDSFNRSI FSNEGEDMTH FFYKETIGEF GNQDPISTKM KVNMPTNMDQ SYNQDTGAFM  300
LIDQGSSSNY STIDLPLLDY NYEQNPFVDQ TFCAVTDTSF PGGLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1491144154Putative transcription factor PCF6
5zkt_B6e-1491144154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g080140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101045.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-148TCP1_ARATH; Transcription factor TCP1
TrEMBLR0GHY51e-178R0GHY5_9BRAS; Uncharacterized protein
STRINGXP_010511641.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-135TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]