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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g075230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 509aa MW: 56317.8 Da PI: 5.6067 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 439.4 | 2.5e-134 | 151 | 503 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++Ll+cAeav++++l+la+al++++ la++++ +m+++a+yf+e+La+r++r + p++++ s++l++ f+e +P+lkf+h Csa05g075230.1 151 LVHALLACAEAVQKNNLKLADALVKHVGLLATSQAGAMRKVATYFAEGLARRIYR--------IYPRDDD-VALSDTLQI--HFYESCPYLKFAH 234 689****************************************************........4466554.334444444..5************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaIlea++++++vH+iD+++++GlQWpaL+qaLa Rp+gpp +R+Tg+gs s +e++e+g++L ++A+++gv+fef+ ++ ++l+dl+ Csa05g075230.1 235 FTANQAILEAFASADKVHVIDLGLNHGLQWPALIQALAVRPNGPPDFRLTGIGS----SLTEIQEVGWKLGQLASTIGVNFEFKSIALNNLSDLK 325 ******************************************************....9************************************ PP GRAS 191 leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +e+L+++p E +aVn+v++lhrll++++s+++ ++++++s++P++++vveqea+hn++ F+erf+e+l+yys+lfdsle l +++++ Csa05g075230.1 326 PEMLDIRPgLEFIAVNSVFELHRLLAQPGSIDK----FISTIRSIRPDIMTVVEQEANHNGTVFVERFTESLHYYSSLFDSLEGPL----SQDRV 412 ********88******************99999....************************************************7....55666 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ +lgr+i n+vaceg++r+erhetl++Wr+r+++ GFkpv+++++a+kqa++ll+ ++ +gy+vee++g+l+lgW++rpL+++SaWr Csa05g075230.1 413 MSELFLGRQILNLVACEGEDRVERHETLNQWRNRFGSGGFKPVNIGSNAYKQASMLLALHAgANGYNVEENDGCLLLGWQTRPLIATSAWR 503 77777*************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 6.4E-32 | 30 | 94 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 5.9E-39 | 30 | 100 | No hit | No description |
PROSITE profile | PS50985 | 64.811 | 125 | 482 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.6E-132 | 151 | 503 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MKREHNLRES STGEGGSSSM TMKEEAAGVD ELLVVLGYKV RSSDMADVAH KLEQLEMVLG 60 GDGVSNLSDE TVHYNPSDLS GWVESMLSDL DPTRTQGKPD SEYDLRAIPG SAVYPREEHV 120 SRRSKRTRVE SEMSTTRSVV VMDSQETGVR LVHALLACAE AVQKNNLKLA DALVKHVGLL 180 ATSQAGAMRK VATYFAEGLA RRIYRIYPRD DDVALSDTLQ IHFYESCPYL KFAHFTANQA 240 ILEAFASADK VHVIDLGLNH GLQWPALIQA LAVRPNGPPD FRLTGIGSSL TEIQEVGWKL 300 GQLASTIGVN FEFKSIALNN LSDLKPEMLD IRPGLEFIAV NSVFELHRLL AQPGSIDKFI 360 STIRSIRPDI MTVVEQEANH NGTVFVERFT ESLHYYSSLF DSLEGPLSQD RVMSELFLGR 420 QILNLVACEG EDRVERHETL NQWRNRFGSG GFKPVNIGSN AYKQASMLLA LHAGANGYNV 480 EENDGCLLLG WQTRPLIATS AWRINRVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-67 | 146 | 502 | 14 | 378 | Protein SCARECROW |
5b3h_A | 1e-67 | 146 | 502 | 13 | 377 | Protein SCARECROW |
5b3h_D | 1e-67 | 146 | 502 | 13 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g075230.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated upon GA treatment. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ177734 | 0.0 | GQ177734.1 Arabidopsis thaliana ecotype Ag-0 RGL1 gene, complete sequence. | |||
GenBank | GQ177753 | 0.0 | GQ177753.1 Arabidopsis thaliana ecotype Nok-3 RGL1 gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511563.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Swissprot | Q9C8Y3 | 0.0 | RGL1_ARATH; DELLA protein RGL1 | ||||
TrEMBL | R0HYV0 | 0.0 | R0HYV0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010511563.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 0.0 | RGA-like 1 |