PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g066090.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 475aa    MW: 51762.5 Da    PI: 9.0675
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g066090.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH223e-07147166626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+f+ + G C++G++C+F H+
  Csa05g066090.1 147 CKFWIA-GNCRRGEQCQFLHS 166
                     666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-6141167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131141168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6142166IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-5142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.5E-13167283IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.39E-44171471IPR017986WD40-repeat-containing domain
SMARTSM003204.0E-4173212IPR001680WD40 repeat
PROSITE profilePS5029422.201180474IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.249180221IPR001680WD40 repeat
PfamPF117159.8E-6195228No hitNo description
PROSITE patternPS006780199213IPR019775WD40 repeat, conserved site
PRINTSPR003203.9E-6199213IPR020472G-protein beta WD-40 repeat
SMARTSM00320170255292IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.8E-28284472IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.011302340IPR001680WD40 repeat
PfamPF004009.9E-5304339IPR001680WD40 repeat
PROSITE profilePS500829.472324349IPR001680WD40 repeat
PRINTSPR003203.9E-6327341IPR020472G-protein beta WD-40 repeat
SMARTSM003202.1E-4343380IPR001680WD40 repeat
PfamPF004000.0018345379IPR001680WD40 repeat
PRINTSPR003203.9E-6367381IPR020472G-protein beta WD-40 repeat
SMARTSM00320460386427IPR001680WD40 repeat
SMARTSM003203.4430467IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDYEAPRRYS QSRNFGGVKR QPQAFAADIV SRRHYYAPYD NTMKKQGPNK LSRNLVWTSK  60
EYKVPEEGNR PSKNDQADNG STKTKPPVLG RGCSVSSNQP RKNAVYGPRN SNLTTRPPVL  120
GRGCSVSVSS NQPRKIATSD TKKSVCCKFW IAGNCRRGEQ CQFLHSWSCR FPGLAMVASL  180
EGHKKDIKGI ALPQGSDKLF SVSSDDTLRI WDCHTGQCVH TINLQAEAAA GSLISEGSWV  240
FLGLRNAVKA FNVQTSKDLH LDGVVAGQVH AMTVANGMLF AGTSSGTISV WKANTDSDVS  300
DPFKYLTSLE GHHSGEVTCF VVGGQLLYSG SVDKTIKVWG LNTLQCVTTL KQHTNTVTSL  360
LCWDKCLISS SLDGTIKFWA FSEDGTLEVT HTRRQEQSFH ALCGVHDAEA KPIIFCSYQN  420
GTVGIYDLPS FEERGNMFST HTISTLTIGP GGLLFSGDKT GNLRVWSLAA GTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-1617947110322Tako8
6g6n_A2e-1617947110322Tako8
6g6n_B2e-1617947110322Tako8
6g6n_C2e-1617947110322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g066090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511378.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010511378.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein