PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g053560.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 664aa MW: 71469.7 Da PI: 6.9741

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g053560.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.7	6.8e-41	60	224	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Csa05g053560.1 60 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 154 789*************************************************************9999988887888888888555556666667 PP TCP 89 .....................................kaaksaakskksqksaasalnlakesrakarar 121 ++ +++++++++q++ ++ + + sr++ r+ Csa05g053560.1 155 ygalglthhhqhqqhqfdeqggafaaaahatpllgfhHHLQQHHHHHQNQAPVETIPDGENYSRKRYRSV 224 7766666665556666677777777766666666665555555555555555555555555555444444 PP
2	TCP	131.5	8.3e-41	319	483	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Csa05g053560.1 319 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 413 789*************************************************************9999988887888888888555556666667 PP TCP 89 .....................................kaaksaakskksqksaasalnlakesrakarar 121 ++ +++++++++q++ ++ + + sr++ r+ Csa05g053560.1 414 ygalglthhhqhqqhqfdeqggafaaaahatpllgfhHHLQQHHHHHQNQAPVETIPDGENYSRKRYRSV 483 7766666666566666777777777776666666665555555555555555555555555555444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.6E-41	65	231	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	66	120	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.7E-41	324	490	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	325	379	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MDLSDIRNNN DTAAAVTGLG GGARQLVDAS LTIVPRSTPL EDSTLSTTTT TTTTSAVAAT 60 TTKRSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIVAA 120 TGTGTIPANF STLSVSLRSS GSTLSAPPSK SVPLYGALGL THHHQHQQHQ FDEQGGAFAA 180 AAHATPLLGF HHHLQQHHHH HQNQAPVETI PDGENYSRKR YRSVDLSKED DDDRKQNESK 240 SLKESETPDP AAAPMWAVAP TTSRSSGGNT FWMLPVPPGG GARQLVDASL TIVPRSTPLE 300 DSTLSTTTTT TTTSAVAATT TKRSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS 360 DGETIEWLLQ QAEPAIVAAT GTGTIPANFS TLSVSLRSSG STLSAPPSKS VPLYGALGLT 420 HHHQHQQHQF DEQGGAFAAA AHATPLLGFH HHLQQHHHHH QNQAPVETIP DGENYSRKRY 480 RSVDLSKEDD DDRKQNESKS LKESETPDPA AAPMWAVAPT TSRSSGGNTF WMLPVPPGNQ 540 MESSSNNNNN TAGHRAPMWP FVNSAGAGAA THFMAGTWFS FPMDQYRGSP LQLGSFVAQP 600 QPTQNLGLSM PDSNLGMLAA LNAAYSRGGN ENGNAEQAVE HQEKPQQSEH DEECREENSN 660 SSE*

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MDLSDIRNNN DTAAAVTGLG GGARQLVDAS LTIVPRSTPL EDSTLSTTTT TTTTSAVAAT  60
TTKRSTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIVAA  120
TGTGTIPANF STLSVSLRSS GSTLSAPPSK SVPLYGALGL THHHQHQQHQ FDEQGGAFAA  180
AAHATPLLGF HHHLQQHHHH HQNQAPVETI PDGENYSRKR YRSVDLSKED DDDRKQNESK  240
SLKESETPDP AAAPMWAVAP TTSRSSGGNT FWMLPVPPGG GARQLVDASL TIVPRSTPLE  300
DSTLSTTTTT TTTSAVAATT TKRSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS  360
DGETIEWLLQ QAEPAIVAAT GTGTIPANFS TLSVSLRSSG STLSAPPSKS VPLYGALGLT  420
HHHQHQQHQF DEQGGAFAAA AHATPLLGFH HHLQQHHHHH QNQAPVETIP DGENYSRKRY  480
RSVDLSKEDD DDRKQNESKS LKESETPDPA AAPMWAVAPT TSRSSGGNTF WMLPVPPGNQ  540
MESSSNNNNN TAGHRAPMWP FVNSAGAGAA THFMAGTWFS FPMDQYRGSP LQLGSFVAQP  600
QPTQNLGLSM PDSNLGMLAA LNAAYSRGGN ENGNAEQAVE HQEKPQQSEH DEECREENSN  660
SSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g053560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079131	1e-111	AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBank	AC079604	1e-111	AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBank	AY081344	1e-111	AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBank	BT008493	1e-111	BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBank	CP002684	1e-111	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511084.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	R0GHN8	0.0	R0GHN8_9BRAS; Uncharacterized protein
STRING	XP_010511084.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-164	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]