PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g043250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 401aa    MW: 44868.6 Da    PI: 4.9684
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g043250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
   Csa05g043250.1 22 KGPWTQAEDNLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                     79*******************************************996 PP
2Myb_DNA-binding46.96.2e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+++ ++++++lG++ W++ a +++ gRt++++k++w++
   Csa05g043250.1  75 KGAFTEKEEQRVIELHALLGNK-WARMAGELP-GRTDNEIKNFWNT 118
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7071769IPR017930Myb domain
SMARTSM007173.3E-152171IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-2821116IPR009057Homeodomain-like
PfamPF002492.6E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-242376IPR009057Homeodomain-like
CDDcd001672.84E-122469No hitNo description
PROSITE profilePS5129424.54970124IPR017930Myb domain
SMARTSM007174.7E-1474122IPR001005SANT/Myb domain
PfamPF002499.2E-1475118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2477122IPR009057Homeodomain-like
CDDcd001675.54E-1077120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGKVRNDSGS DDDNATEKTF TKGPWTQAED NLLIAYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PDLKKGAFTE KEEQRVIELH ALLGNKWARM AGELPGRTDN EIKNFWNTRL  120
KRLQRLGLPV YPDDVREQAM NAATQSGFNN GLSLDGHHSQ DSLESDSVEI PELDFQHLPL  180
NQCSSYYKSM LRSVPTSGVF VRQNPCFFQP NVYNMMSSSP YISTGKRSRE PETAFPCTGG  240
SYAMNVQSPP LWNYPFVDNI SEQLPDSHLL DDATYYSPPE PLIHELPSFQ YFNPHEEPGG  300
AQQSNSMQEH ESDNTLVQSP VSPSSLYDGL LESIVYGSAR KKQVTDTDLE STLPLQSSLL  360
GHTDEPTTDN FGSTSSNERR ISFDGDWIRL LLGEDTGTTK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30201225106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g043250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101058.10.0PREDICTED: transcription factor MYB104-like
SwissprotQ9SM271e-112MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFF10.0D7LFF1_ARALL; Predicted protein
STRINGXP_010473083.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.10.0myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]