PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g041760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 438aa    MW: 49422.5 Da    PI: 7.3949
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g041760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-092532901954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp   ++  LAk++gLt++qV++WF N R +
  Csa05g041760.1 253 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVR 290
                     6644599*****************************87 PP
2BELL106.41.8e-34134204272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rqel++k+ kL+s++e+V++rYkqy++q+qt+issFe+ aglgsa+pYt+ Al++iS++Fr ++d+i+ qi
  Csa05g041760.1 134 RQELEMKRGKLISMVEKVEQRYKQYHDQMQTIISSFEQEAGLGSANPYTHTALQTISKKFRVVRDMICLQI 204
                     79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-4472202IPR006563POX domain
PfamPF075261.6E-3383200IPR006563POX domain
PROSITE profilePS5007111.936231294IPR001356Homeobox domain
SMARTSM003891.1E-8234298IPR001356Homeobox domain
CDDcd000869.06E-12234295No hitNo description
SuperFamilySSF466898.13E-17235300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27237298IPR009057Homeodomain-like
PfamPF059203.0E-17251290IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASFFHGESN MREPSSDLFM MNLNPFPEPT ITTNAHNYHS YNLCFGSQQH GPRDEVEDHI  60
VQVNSSVSTY SYEEVFRGLT PIYLRAAQQL LNEIVNVGNG SPGAKQESIM SKESAIYGKG  120
DIVGGHKPGV AAYRQELEMK RGKLISMVEK VEQRYKQYHD QMQTIISSFE QEAGLGSANP  180
YTHTALQTIS KKFRVVRDMI CLQIKHVNKL LGKKESDEQL MHLGKMAHHH SNAWRPQRGL  240
PEKAVSILRA WLFEHFLHPY PRDLDKVMLA KQTGLTKSQV SNWFINARVR VWKPMVEELY  300
LEEMNIEESR KGSNPNEHST NGSSSKQPYN NSTSDESSNS ILPTFYQGFN ENGTPMPNLS  360
SSCSIGRFRK QHMNQANFIH FNGGFENYHT MVGNGVSLSL GLPHSCDQTF NNIQFGSTSH  420
GTEISGIYPS STYQIMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16240298563Homeobox protein Meis2
3k2a_B2e-16240298563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g041760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510795.10.0PREDICTED: BEL1-like homeodomain protein 5 isoform X1
RefseqXP_010510797.10.0PREDICTED: BEL1-like homeodomain protein 5 isoform X1
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLR0FW020.0R0FW02_9BRAS; Uncharacterized protein
STRINGXP_010510795.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5