 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa05g038530.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 288aa MW: 31148.7 Da PI: 7.7991 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa05g038530.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.5 | 0.00045 | 115 | 137 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C+++Fs+ L H +H
Csa05g038530.1 115 YECKTCNRTFSSFQALGGHRASH 137
99**********99999998887 PP
|
| 2 | zf-C2H2 | 13.3 | 0.00024 | 191 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg F++ L H+r+H
Csa05g038530.1 191 HECSICGSEFTSGQALGGHMRRH 213
78********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF VVTTATTVTS TSSSAGGSGG RAVSDEYNSA 60
VSSPVTTTDC TQEEEDMAIC LIMLARGTVL PSPDLKNSRK IHQKISSEDS SFYVYECKTC 120
NRTFSSFQAL GGHRASHKKP RTSTDEKTRS PLMQPKSSAS EEGQNSPFKV SGSALASQAS 180
NIIINKANKV HECSICGSEF TSGQALGGHM RRHRTAITTV SPVAATAEVS RNSTEEETEI 240
NMSRSMEQQR KYLPLDLNLP APEDDLRESK FQGIVFSATP ALIDCHY*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC005851 | 0.0 | AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence. |
| GenBank | AC006202 | 0.0 | AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence. |
| GenBank | AK175493 | 0.0 | AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09. |
| GenBank | AK229812 | 0.0 | AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
