PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g036990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 456aa    MW: 49974 Da    PI: 6.6766
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g036990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17152201155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Csa05g036990.1 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-9152201IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-15152209IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-17153209IPR001471AP2/ERF domain
PROSITE profilePS5103217.82153209IPR001471AP2/ERF domain
CDDcd000183.74E-11153208No hitNo description
SMARTSM003801.2E-32153215IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-5244289IPR016177DNA-binding domain
SMARTSM003807.2E-7245293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MLDLNLDADS PDSTQYGDSY LDRQTSDGSA GNRLEESGTS TSSVINADGD EDSCSNTRAF  60
TLSFDILKVG TSSSGGEETP VAGVTTKEFF PVTGDCGHLR DLQGSSSSRS WIDLSFDGET  120
KLAAPVPVPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS  240
RGSSKYRGVT LHKCGRCEAR MGQFLGKKAY DKAAINTNGT EAVTNFDMSS YQNEINSQAN  300
NEGGHEKLDL NLGMSLSPGN APKQNERLFH FPSNTYETQR GVSLRMDIEF MGKPVNTPIP  360
YGSTDHRVYW NGACPSYNNP IEGRATEKRS EAEGMMSNWG WQRPGQTSTV QQQPPGPQPP  420
PPPLFSVAAA SSGFSHFRPQ PPNDNATHGY FYPQP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g036990.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031000.0AF003100.1 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds.
GenBankAF3250740.0AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0508150.0AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0914180.0AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510604.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLR0HUN30.0R0HUN3_9BRAS; Uncharacterized protein
STRINGXP_010510603.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.10.0related to AP2.7