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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g035680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 16757.4 Da PI: 10.2866 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F++ L H +H Csa05g035680.1 34 FACKTCNKEFPSFQALGGHRASH 56 78**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00054 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Csa05g035680.1 78 HECPICGAEFAVGQALGGHMRKH 100 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.94E-8 | 32 | 100 | No hit | No description |
Pfam | PF13912 | 6.9E-13 | 33 | 58 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.743 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.2E-10 | 78 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEMERSDMEM INKMASCLIL LSKNHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA 60 ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH RGGAGGGGGR SLAPATAPVT 120 MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRLIF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 109 | RGGAGGGGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g035680.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007184 | 0.0 | AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence. | |||
GenBank | BT029330 | 0.0 | BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510589.1 | 1e-111 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 2e-41 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | R0FYC6 | 5e-98 | R0FYC6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010510589.1 | 1e-111 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-93 | C2H2 family protein |