PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g025760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 726aa MW: 83015.4 Da PI: 6.9633

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g025760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.2	1.3e-23	57	142	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g+++e + + ++r+ +tgCka l++k+++d+kw+++++++eHnHe++p Csa05g025760.1 57 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREISAA----INPRSCPKTGCKAGLHMKRKEDEKWVIYSFVKEHNHEICP 142 9*************************************998777....99*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-21	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.7E-23	224	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.126	502	540	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-6	506	537	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-7	515	542	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MDVEEVGIDL LTRSGNVDEF CEASTSGNVA RSLDQFTTVG KPRDGMEFES KEAAYYFYRE 60 YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREIS AAINPRSCPK TGCKAGLHMK 120 RKEDEKWVIY SFVKEHNHEI CPDDLYISIR GKNKPAGALA KPKKGLQLAI EKEDFKLLLE 180 HFMDMQDKQP GFFYAVDFNS ENHVRNVFWL DAKAKHDYCS FSDVVLFDTF YVRSRYRIPF 240 APFIGVSHHC QYVLLGCVLI GEESESTYSW IFRTWLKAVG GHAPGVMITD QDQLLSDIVV 300 EVFPSARHCF CLWSVLSKIP EMLNPFVSQD DGFVESFRNC VHSSWTDEQF ERRWSNIISK 360 FELDENEWLQ LLFRDRKKWV PLYFHGICLA GLSGPERPAS VAAHFDHYMN SEATFKDFFE 420 LYGQFLQYRS DVEAKDDLES QSKQPTVKSS LAFEKQLSLI YTDAAFKKFQ AQVPGVVSCQ 480 LRKEREDGTT AIFRVEDFEE RQNLSVALNK ELLDVCCSCH LFEYQGFLCK HAILVLQNSD 540 VSCIPSQYIL KRWSKRCNNI EGKKEKCVAI HNRMARFDDL CRRFVKLGEV ASLSDEAYKT 600 ALTLLEETKK HCVNDSPKFP SEQDKLMTGG SIGLEGEGML ESTSKLSKKK KIQKKRKVYC 660 RPEDATNRSE ELPQETEQVS SRASTFENCY IPQADMEETE QGSRATNFGV YYSTQQTIQG 720 VGSLL*

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MDVEEVGIDL LTRSGNVDEF CEASTSGNVA RSLDQFTTVG KPRDGMEFES KEAAYYFYRE  60
YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREIS AAINPRSCPK TGCKAGLHMK  120
RKEDEKWVIY SFVKEHNHEI CPDDLYISIR GKNKPAGALA KPKKGLQLAI EKEDFKLLLE  180
HFMDMQDKQP GFFYAVDFNS ENHVRNVFWL DAKAKHDYCS FSDVVLFDTF YVRSRYRIPF  240
APFIGVSHHC QYVLLGCVLI GEESESTYSW IFRTWLKAVG GHAPGVMITD QDQLLSDIVV  300
EVFPSARHCF CLWSVLSKIP EMLNPFVSQD DGFVESFRNC VHSSWTDEQF ERRWSNIISK  360
FELDENEWLQ LLFRDRKKWV PLYFHGICLA GLSGPERPAS VAAHFDHYMN SEATFKDFFE  420
LYGQFLQYRS DVEAKDDLES QSKQPTVKSS LAFEKQLSLI YTDAAFKKFQ AQVPGVVSCQ  480
LRKEREDGTT AIFRVEDFEE RQNLSVALNK ELLDVCCSCH LFEYQGFLCK HAILVLQNSD  540
VSCIPSQYIL KRWSKRCNNI EGKKEKCVAI HNRMARFDDL CRRFVKLGEV ASLSDEAYKT  600
ALTLLEETKK HCVNDSPKFP SEQDKLMTGG SIGLEGEGML ESTSKLSKKK KIQKKRKVYC  660
RPEDATNRSE ELPQETEQVS SRASTFENCY IPQADMEETE QGSRATNFGV YYSTQQTIQG  720
VGSLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g025760.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228730	0.0	AK228730.1 Arabidopsis thaliana mRNA for Mutator-like transposase, complete cds, clone: RAFL16-06-P03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510067.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like isoform X5
Refseq	XP_010510072.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like isoform X7
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	R0HA26	0.0	R0HA26_9BRAS; Uncharacterized protein
STRING	XP_010510061.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]