PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g023660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 310aa    MW: 34618.3 Da    PI: 8.519
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g023660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.5e-114570126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C+ff+rtG+C yG++C+++H+
  Csa05g023660.1 45 PGERDCQFFLRTGQCGYGNTCRYNHP 70
                    5789*********************9 PP
2zf-CCCH36.48.7e-1291115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tG CkyG++Ck++H++
  Csa05g023660.1  91 QPDCEYFLKTGACKYGPTCKYHHPK 115
                     789********************96 PP
3zf-CCCH33.47.9e-11136159326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+++++tG C++G  CkF+H+
  Csa05g023660.1 136 EKSCPYYMQTGLCRFGVACKFHHP 159
                     667********************8 PP
4zf-CCCH40.64.2e-13266290327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Crff+ tGtCkyGd Ck++H++
  Csa05g023660.1 266 RAECRFFMNTGTCKYGDDCKYSHPK 290
                     799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4554472IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-94670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-64872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-45069IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.90688116IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-688115IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-692116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-494114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61133161IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5133160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6133161IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4138158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7261292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164263291IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-8264290IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10266290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-7269291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSETQQQVQN STGSIRSPEK IEDTLRRVKV NEDNMDQSSP YPDRPGERDC QFFLRTGQCG  60
YGNTCRYNHP LTHLPQGVIY YKDQLPERIG QPDCEYFLKT GACKYGPTCK YHHPKDRNGA  120
GPVLFNVLGF PMRQGEKSCP YYMQTGLCRF GVACKFHHPH PQAPNGHSAY AMSSFPPSVG  180
FPYGSGMTMM SLPPATYGAM PRPQVPQSQA YMPFMVAPSQ GLLPPQGWAT YMAASNPIYN  240
VKTQPDSSSS VSVPVAVTSH HHISERAECR FFMNTGTCKY GDDCKYSHPK ERLLQSPPNL  300
LNPIVLPVRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g023660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1387440.0AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513101.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLD7LFN30.0D7LFN3_ARALL; Uncharacterized protein
STRINGXP_010513101.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2