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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa05g022930.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
NAC |
Protein Properties |
Length: 257aa MW: 29296.2 Da PI: 9.1075 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa05g022930.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 146.6 | 1.3e-45 | 15 | 130 | 1 | 121 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp ++e yfFs+++ ky++g+r+nr+t sgyWkatg dk++ +
Csa05g022930.1 15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTKEAKYPNGNRSNRSTGSGYWKATGIDKQIGK- 104
79****************************.99***************44...47899**********************************99. PP
NAM 96 kgelvglkktLvfykgrapkgektdW 121
k+ +vg+kktLvfykg+ p+g++t+W
Csa05g022930.1 105 KTLAVGMKKTLVFYKGKPPNGTRTNW 130
8999********************** PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MEKRSSTKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL 60 PGDCDSERYF FSTKEAKYPN GNRSNRSTGS GYWKATGIDK QIGKKTLAVG MKKTLVFYKG 120 KPPNGTRTNW GQNMNWVLCR VFLKKRSNSN KRKEEERDEL ENEKETEKES EEEKKKSSTC 180 PIFYDFMRKD KKNKIRRRRC CDLNLTPATS CCCCCFCSSS SGSSSSVCSS ALTQTSSNDS 240 YHEEISCQEN KFCLFL*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-45 | 13 | 151 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-45 | 13 | 151 | 15 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF325080 | 1e-147 | AF325080.1 Arabidopsis thaliana putative NAM (no apical meristem)-like protein (At2g33480) mRNA, complete cds. |
GenBank | AF410299 | 1e-147 | AF410299.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds. |
GenBank | AY093730 | 1e-147 | AY093730.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds. |