 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa05g021640.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
AP2 |
| Protein Properties |
Length: 331aa MW: 37055.1 Da PI: 8.2108 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa05g021640.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 66.9 | 4e-21 | 70 | 119 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+W+AeIrdp + + +r++lg+f+taeeAa a+++a+ +++g+
Csa05g021640.1 70 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRGH 119
9*******.**********9...3.35*************************997 PP
|
| 2 | AP2 | 66.9 | 4e-21 | 185 | 234 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+W+AeIrdp + + +r++lg+f+taeeAa a+++a+ +++g+
Csa05g021640.1 185 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRGH 234
9*******.**********9...3.35*************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MHSGKSPLSP ESMAGNREEK EEALCRCSTL SESDVSAFVS ELTDQPIPPS MDQSSSLTLQ 60
EQSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD TAEEAALAYD KAAFEFRGHK 120
AKLNFPENIR INSTQLIYPS TATSHASIIV TPPPAIAPDM LLDQYGQFQS RNSDYEQSNS 180
RQRNYRGVRQ RPWGKWAAEI RDPNKAARVW LGTFDTAEEA ALAYDKAAFE FRGHKAKLNF 240
PENIRINSTQ LYPLSSTSHA SVIVTPPPAI APDMLLDQYG QFQSRNSDYG ANLSLTMSSS 300
SSSSLNHQGD RPNLEDDENM KNISIHKRRK *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY136456 | 1e-168 | AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. |
| GenBank | BT000236 | 1e-168 | BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. |
