PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g021440.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 627aa MW: 68493 Da PI: 6.87

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g021440.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	133	153	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC+ffa+ G+C G +CkF H+ Csa05g021440.1 133 LCKFFAK-GWCFNGVSCKFLHV 153 8****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0081	128	154	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-6	128	152	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-4	133	154	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.004	133	155	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MSDSDMDIDD DEVEQKVQVH TIGGESKPIQ APNPQNALIY EVGKFITTVT ELKVLYFVSV 60 GNSFVHSNSS HVDVKRHSVT TPSNEQANII KEQAFAQDNG TLSRFPAPGI TPNSFFPAAG 120 EGNEPEQKRA AHLCKFFAKG WCFNGVSCKF LHVKENSNCT SQQQPENNMA GSSYIQSDVE 180 RRISNSIRVS HLMENGVTPS HTREDLSFVN PPGSQRVFSS MSFVNPPGSQ RVFPFNNEMR 240 FLPSSENIGR ESLQQTCGAA FTDNRSLVIN NSNSFTLRSS FVHHEHRSPI SSYLKPDIGS 300 SGPAWTGSLS SSVASVPMNE GASTVANFKK EDNIYGSRSL PTLQESQAAV SSEKGAAGNT 360 TSSRKKVSSD DWEPSEPFKA SFTIPPYILP SSDALYDPFT DIENLGDRSL NASLSSKGEQ 420 ARKISRQQKD GDSGSGTQAR ECKNDDKSSS CSQNQHQESV ARRSLEAHGV VEGVATSVVD 480 QNDTTTPSKE ISSVAAAENR VVLKRSKPAG HDAWHRSDGS SYKKTLKPDE IDGEVRSDAE 540 IKVMRQFRTA VVETVKEMLK PLWREGRLTK DVHNMIVKKA AEKVVSAAVQ FHQVPTDTGS 600 VDQYLGLSAT KIVKLVEGYV EKYGKP*

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MSDSDMDIDD DEVEQKVQVH TIGGESKPIQ APNPQNALIY EVGKFITTVT ELKVLYFVSV  60
GNSFVHSNSS HVDVKRHSVT TPSNEQANII KEQAFAQDNG TLSRFPAPGI TPNSFFPAAG  120
EGNEPEQKRA AHLCKFFAKG WCFNGVSCKF LHVKENSNCT SQQQPENNMA GSSYIQSDVE  180
RRISNSIRVS HLMENGVTPS HTREDLSFVN PPGSQRVFSS MSFVNPPGSQ RVFPFNNEMR  240
FLPSSENIGR ESLQQTCGAA FTDNRSLVIN NSNSFTLRSS FVHHEHRSPI SSYLKPDIGS  300
SGPAWTGSLS SSVASVPMNE GASTVANFKK EDNIYGSRSL PTLQESQAAV SSEKGAAGNT  360
TSSRKKVSSD DWEPSEPFKA SFTIPPYILP SSDALYDPFT DIENLGDRSL NASLSSKGEQ  420
ARKISRQQKD GDSGSGTQAR ECKNDDKSSS CSQNQHQESV ARRSLEAHGV VEGVATSVVD  480
QNDTTTPSKE ISSVAAAENR VVLKRSKPAG HDAWHRSDGS SYKKTLKPDE IDGEVRSDAE  540
IKVMRQFRTA VVETVKEMLK PLWREGRLTK DVHNMIVKKA AEKVVSAAVQ FHQVPTDTGS  600
VDQYLGLSAT KIVKLVEGYV EKYGKP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269\|PubMed:16291783, ECO:0000269\|PubMed:21282526}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g021440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228866	0.0	AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010509823.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
Swissprot	Q84VG7	0.0	FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBL	R0HRT6	0.0	R0HRT6_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010509823.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13468	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	0.0	C3H family protein

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645]