PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g021350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 389aa MW: 43072.4 Da PI: 8.8637 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.5e-18 | 54 | 114 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+ Csa05g021350.1 54 KPRWNPKPEQIRILEAIFNSgMVNPPREEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 114 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112.3 | 2.5e-36 | 53 | 115 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P++eei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k Csa05g021350.1 53 PKPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 115 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.689 | 50 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-12 | 51 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-8 | 52 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-8 | 53 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 54 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.0E-16 | 54 | 114 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPHPPH QWQHDINSPL LPSASHRSSP FSSGCEVERS PEPKPRWNPK 60 PEQIRILEAI FNSGMVNPPR EEIRRIRAQL QEYGQVGDAN VFYWFQNRKS RSKHKLRLLH 120 HSKHSLPQSQ PQPQPQPQQQ SLSSANSASS SSSSSSSSSK STKPRKNKNK NNTNLSLGSS 180 QMMGTMFPPE AAFLFPVSTV GGFEGITVSS QLGFLSGDMI EQQKPAPTMG PCTGLLLSEI 240 MNGSVSYGTH HQQHLSEKED EEMRMKMLQQ PQPQICYATT SQQITCYNNN NNIMLHVPPT 300 TSTTTTITTS HSLATVPSTS DQLQVQAGAR IRVFINEMEL EVTPGPFNVR DAFGEEVVLI 360 NSAGQPIVTD EYGVALQPLQ HGASYYLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g021350.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118501 | 0.0 | AK118501.1 Arabidopsis thaliana At2g33880 mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL19-73-K21. | |||
GenBank | AY251401 | 0.0 | AY251401.1 Arabidopsis thaliana WOX9 protein mRNA, complete cds. | |||
GenBank | BT005296 | 0.0 | BT005296.1 Arabidopsis thaliana At2g33880 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509812.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 9-like | ||||
Swissprot | Q6X7J4 | 0.0 | WOX9_ARATH; WUSCHEL-related homeobox 9 | ||||
TrEMBL | R0G0R0 | 0.0 | R0G0R0_9BRAS; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4M6W2 | 0.0 | V4M6W2_EUTSA; Uncharacterized protein | ||||
STRING | XP_010509812.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7206 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 1e-112 | homeobox-3 |
Publications ? help Back to Top | |||
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