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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa05g018720.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 231aa MW: 25078.7 Da PI: 10.5899 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa05g018720.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 265.5 | 2.9e-81 | 28 | 230 | 94 | 301 |
GAGA_bind 94 alpvgvqvlsgtksidslqqlsepqledsavelreeeklealpie.eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaders 187
+ ++ ++++t+ id +q +q ++ + ++ + +p++ + ++ + ++++k+++q+++k++++k+ +kk+ ++s+k++k+ s +++
Csa05g018720.1 28 HWFHSHIAVPKTTGIDLSQV---SQANPAEGVMVPQSRSFYPPTTiDYRNGVATVEQKSTNQSPSKALKPKTPRKKR--SASNKSKKTLSI-PET 116
33344677889999998777...333333333555555555554415566667777777788888777777766666..677777777776.799 PP
GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
k+ekk++d++++ s+D+s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGy+ls p
Csa05g018720.1 117 KREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLAGEGYSLSYP 211
*********************************************************************************************** PP
GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301
vDLk+hWA+HGtnkfvti+
Csa05g018720.1 212 VDLKNHWARHGTNKFVTIK 230
******************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MNSFPSQNLM LSATNANKDA ALLTSNAHWF HSHIAVPKTT GIDLSQVSQA NPAEGVMVPQ 60
SRSFYPPTTI DYRNGVATVE QKSTNQSPSK ALKPKTPRKK RSASNKSKKT LSIPETKREK 120
KNLDINIDIS SFDTSGVPPP VCSCTGVSRV CYKWGMGGWQ SSCCTISIST YPLPMSTTRP 180
GARLAGRKMS NGAYVKLLAR LAGEGYSLSY PVDLKNHWAR HGTNKFVTIK *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU089961 | 0.0 | EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds. |
