PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g018570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 314aa MW: 35875.8 Da PI: 9.8101

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g018570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.8	5.2e-17	22	102	2	73
trihelix 2 WtkqevlaLiearremeerlrrg.k........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+l+Liea++ eer r+ + + + +W+++ +++++rg++r+++qC++kw+nl + ykki+e e++r + Csa05g018570.1 22 WTVSETLVLIEAKKMEEERRVRRpEkkpenrnkSTELRWKWIEEYCWRRGCQRNQNQCNDKWDNLMRGYKKIREYERSRIE 102 **********996655554422123333333999**************************************99833 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	14	87	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-12	21	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MAEPSGCGAR EMVMREYRKG NWTVSETLVL IEAKKMEEER RVRRPEKKPE NRNKSTELRW 60 KWIEEYCWRR GCQRNQNQCN DKWDNLMRGY KKIREYERSR IESSFNTGSS SSQPASYWKM 120 EKSERKERSL PSNMLSRIYD ALAELVEKKT LPYGNGGQIL RVCQGFVAPM MAQPRHQIPT 180 TIVLSLQSPP PPQPPPFTFH AESIHPTVDT SGGKRRRTTT PGETTTAQGE SEDAEVMVGA 240 AISRSALVIA QVIKESEERQ EMRHKEVMRL QERRLKMEES KDDINRQGMS GLVNAINQLT 300 TSILALASSS SLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g018570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516756.1	1e-178	PREDICTED: uncharacterized protein LOC104792327
Refseq	XP_010516759.1	1e-178	PREDICTED: uncharacterized protein LOC104792327
TrEMBL	R0FXE5	1e-152	R0FXE5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010509585.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-117	Trihelix family protein