PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g017750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 402aa    MW: 45178.9 Da    PI: 4.2504
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g017750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.51.4e-3148142397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +++ ws++De+v+L G++d++ +t++s  +d+ a+y +vk+++++k+sk+q+++K++rLK++f  +++++++gk++sf+ ++d++if+ls++iW 
  Csa05g017750.1  48 SKMNWSKNDELVILGGIVDYEIETKSSHGSDWAALYLYVKDNVEAKFSKKQFIDKVKRLKRRFIYNQERTNDGKDVSFTDTDDDEIFKLSMMIWA 142
                     7899*********************99999****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-2450141IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVATKRVGDH SNSSSDDSIT RKRDDDHRTR KQLKTTTTKT TLKSSSASKM NWSKNDELVI  60
LGGIVDYEIE TKSSHGSDWA ALYLYVKDNV EAKFSKKQFI DKVKRLKRRF IYNQERTNDG  120
KDVSFTDTDD DEIFKLSMMI WAKSETEHVV SNEDMDQAKD VPSGEQEGKS VPCAEQERVS  180
VEIDNGEKEK LDQAKDVPCA EQEDKDVPGA ELEDKDVPCA EKEDKDVPCA EKEDEDVPGA  240
EQEDKDVPCA EKEDEDVPGA EQEDKDVPCA EQEQVSNEID NGEQEMIEED GVDELGVMED  300
TLESVISFQS LAKNGEKDKS EEDGVGELGV LLEILEADKF YQNCSKYQQK LLRQKLENVG  360
AERRKELIDE WKALLVQEMK LSIKKFNFLA KIANAGVGVS P*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g017750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509485.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like 3
SwissprotQ9SJM41e-158STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLA0A178VUJ81e-156A0A178VUJ8_ARATH; Uncharacterized protein
STRINGXP_010509485.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-140DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]