PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g016730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 77aa MW: 8115.89 Da PI: 10.9176 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 132.9 | 8.3e-42 | 8 | 76 | 2 | 70 |
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++a+veakGlnPGlivllvvggll+++l++ny++y+yaqknlPP+kkkPvskkklkreklkqGv+vPGe Csa05g016730.1 8 GKAAVEAKGLNPGLIVLLVVGGLLVTLLIANYVMYMYAQKNLPPKKKKPVSKKKLKREKLKQGVPVPGE 76 5789****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 2.1E-37 | 12 | 76 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MSSQGSAGKA AVEAKGLNPG LIVLLVVGGL LVTLLIANYV MYMYAQKNLP PKKKKPVSKK 60 KLKREKLKQG VPVPGE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g016730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF372892 | 2e-71 | AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds. | |||
GenBank | AY085439 | 2e-71 | AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence. | |||
GenBank | BT002669 | 2e-71 | BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509388.1 | 4e-45 | PREDICTED: DNA-binding protein S1FA2-like | ||||
Swissprot | Q42337 | 2e-28 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A178VX36 | 4e-26 | A0A178VX36_ARATH; Uncharacterized protein | ||||
STRING | XP_010509388.1 | 2e-44 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2823 | 27 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37120.1 | 7e-11 | S1FA-like DNA-binding protein |