PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g015460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 304aa    MW: 33624.2 Da    PI: 5.0696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g015460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.3e-082974346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + + ++   +W ++a++++ g+   +++  ++ 
   Csa05g015460.1 29 KWTAEENKKFENALAFYDKDtpdRWVKVAAMLP-GKNVGDVIKQYRE 74
                     8********************************.**99999988875 PP
2Myb_DNA-binding48.52e-15147191347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
   Csa05g015460.1 147 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 191
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0782580IPR017884SANT domain
SMARTSM007171.8E-92678IPR001005SANT/Myb domain
SuperFamilySSF466893.16E-112882IPR009057Homeodomain-like
PfamPF002496.3E-62974IPR001005SANT/Myb domain
CDDcd001673.78E-72975No hitNo description
PROSITE profilePS5129421.845140196IPR017930Myb domain
SuperFamilySSF466891.73E-17142195IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-18143195IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-13144191IPR009057Homeodomain-like
SMARTSM007178.7E-14144194IPR001005SANT/Myb domain
CDDcd001671.43E-11147192No hitNo description
PfamPF002497.9E-13147191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNRGIEVMSP ATYLETSNWL FQENSRGTKW TAEENKKFEN ALAFYDKDTP DRWVKVAAML  60
PGKNVGDVIK QYRELEEDVS DIEAGLIPIP GYASDSFTLD WGGYDGAAAA AGNNGFNMNG  120
YYFSAAVGGK RGSAARTAEH ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN IARNFVTTRT  180
PTQVASHAQK YFIRQVNGGK DKRRSSIHDI TTVNIPDSPD AAATDNVTAN APCSPPSVGG  240
SQQEASEWDG QPLYDETVAA FYNQNAFPET LLGMSSTPYM AKLQEQSFLN ASQFESYNAY  300
LQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-162794875RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g015460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1181350.0AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04.
GenBankAY5195290.0AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds.
GenBankBT0061220.0BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509228.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-96DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0FXY90.0R0FXY9_9BRAS; Uncharacterized protein
STRINGXP_010509228.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.10.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]