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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g015280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 295aa MW: 35026.3 Da PI: 7.1651 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.5 | 5.8e-26 | 47 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li +r e+++++ ++k++k lWe +s+kmr++ f rsp+qCk+kw+nl +r+k ++++e + +++++p++d+++ Csa05g015280.1 47 QWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCETMEAEI---ARQQFPFYDDMQ 129 7********************************************************************97...45679*****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0048 | 44 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.25E-23 | 46 | 111 | No hit | No description |
Pfam | PF13837 | 4.6E-20 | 47 | 129 | No hit | No description |
PROSITE profile | PS50090 | 7.631 | 48 | 104 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDGHHQHHHL QQLQYLNKHH HLHHPHPQSS QTPEIASPVA GGDRFPQWSV EETKELIGIR 60 GELDQTFMET KRNKLLWEVI SNKMRDKSFP RSPEQCKCKW KNLVTRFKGC ETMEAEIARQ 120 QFPFYDDMQI IFTTRMQRML WVESEGGVGG TSGTAARKRE YSSDEEEENV NEELVDVSND 180 PKILTNPKKN IAKKRKGSSN SNNGVREVLE EFMRHQIRME SEWREGWEAR EKERAEKEEE 240 WRRKMEDLEK ERVTMERMWR DREEQRRSRE EMRAEKRDSL INALLAKLTR DGSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 1e-12 | 44 | 125 | 3 | 84 | DNA binding protein GT-1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 195 | PKKNIAKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g015280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF453582 | 0.0 | AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509204.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 1e-134 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | D7LLG4 | 1e-143 | D7LLG4_ARALL; Predicted protein | ||||
STRING | XP_010509204.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-105 | Trihelix family protein |
Publications ? help Back to Top | |||
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