PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g015240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 351aa    MW: 39666.6 Da    PI: 9.0265
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g015240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.5e-3251104255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Csa05g015240.1  51 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 104
                     8****************************************************7 PP
2G2-like101.26.5e-32184237255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Csa05g015240.1 184 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 237
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2947105IPR009057Homeodomain-like
PROSITE profilePS5129412.75947107IPR017930Myb domain
SuperFamilySSF466892.15E-1449105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2251106IPR006447Myb domain, plants
PfamPF002491.2E-952103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-29180238IPR009057Homeodomain-like
PROSITE profilePS5129412.759180240IPR017930Myb domain
SuperFamilySSF466892.15E-14182238IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22184239IPR006447Myb domain, plants
PfamPF002491.2E-9185236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MISSMEGGEK TDREEEEDEG EGQESKASSN STVEESDKKT KVRPYVRSKV PRLRWTPDLH  60
LRFVRAVERL GGQERATPKL VRQMMNIKGL SIAHVKSHLQ MYRSKKIDDH GQDRNIYKLS  120
QLPMFRGYNH NNDSPFSMEG GEKTDREEEE DEGEGQESKA SSNSTVEESD KKTKVRPYVR  180
SKVPRLRWTP DLHLRFVRAV ERLGGQERAT PKLVRQMMNI KGLSIAHVKS HLQMYRSKKI  240
DDHGQDMEVN FQMLRCGVLA HTKQTGTTGK RNASTSLDLD LDLSLKITQP EKTVSEETES  300
AATTTDQTLS LSLCSGSSAL KKSRLIKTDD EEDRTVKSGC RQASTLDLTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-1752239357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1752239357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1752239357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1752239357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1752239458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g015240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176891e-123AK117689.1 Arabidopsis thaliana At2g38300 mRNA for unknown protein, complete cds, clone: RAFL17-35-G17.
GenBankBT0049731e-123BT004973.1 Arabidopsis thaliana clone U50495 unknown protein (At2g38300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505451.11e-138PREDICTED: two-component response regulator ARR18-like isoform X2
TrEMBLR0HTS21e-101R0HTS2_9BRAS; Uncharacterized protein
STRINGXP_010505450.11e-133(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-80G2-like family protein